PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Ppr_706.29821.g View in Genome Browser
Position	scaffold706:4718335-4734349 (+) 16014bp
Gene Type	gene
Gene Description (Protein Product)	lysine-specific demethylase
Organism	Populus pruinosa
Also AS	Potri.003G126600AT1G63490Potri.003G126600.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Ppr_8060.32990.g Retinoblastoma-binding protein

Ppr_902.33890.g Histone-lysine N-methyltransferase

Ppr_900.33828.g Histone-lysine N-methyltransferase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000122	negative regulation of transcription by RNA polymerase II	BP
GO:0000976	transcription cis-regulatory region binding	MF
GO:0001046	core promoter sequence-specific DNA binding	MF
GO:0001047	core promoter sequence-specific DNA binding	MF
GO:0001067	transcription regulatory region nucleic acid binding	MF
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003682	chromatin binding	MF
GO:0003690	double-stranded DNA binding	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0003712	transcription coregulator activity	MF
GO:0003713	transcription coactivator activity	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006325	chromatin organization	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006357	regulation of transcription by RNA polymerase II	BP
GO:0006464	protein modification process	BP
GO:0006482	protein demethylation	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007623	circadian rhythm	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008214	protein dealkylation	BP
GO:0008270	zinc ion binding	MF
GO:0009889	regulation of biosynthetic process	BP
GO:0009890	negative regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010558	negative regulation of macromolecule biosynthetic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0010639	negative regulation of organelle organization	BP
GO:0016043	cellular component organization	BP
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016577	histone demethylation	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0031056	regulation of histone modification	BP
GO:0031057	negative regulation of histone modification	BP
GO:0031063	regulation of histone deacetylation	BP
GO:0031064	negative regulation of histone deacetylation	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031327	negative regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031399	regulation of protein modification process	BP
GO:0031400	negative regulation of protein modification process	BP
GO:0031490	chromatin DNA binding	MF
GO:0032268	regulation of protein metabolic process	BP
GO:0032269	negative regulation of protein metabolic process	BP
GO:0032451	demethylase activity	MF
GO:0032452	histone demethylase activity	MF
GO:0032453	histone H3K4 demethylase activity	MF
GO:0032501	multicellular organismal process	BP
GO:0032922	circadian regulation of gene expression	BP
GO:0032991	protein-containing complex	CC
GO:0032993	protein-DNA complex	CC
GO:0033043	regulation of organelle organization	BP
GO:0033044	regulation of chromosome organization	BP
GO:0034647	histone H3K4me/H3K4me2/H3K4me3 demethylase activity	MF
GO:0034648	obsolete histone demethylase activity (H3-dimethyl-K4 specific)	MF
GO:0034720	histone H3-K4 demethylation	BP
GO:0034721	histone H3-K4 demethylation, trimethyl-H3-K4-specific	BP
GO:0035064	methylated histone binding	MF
GO:0036211	protein modification process	BP
GO:0042393	histone binding	MF
GO:0043086	negative regulation of catalytic activity	BP
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043412	macromolecule modification	BP
GO:0043565	sequence-specific DNA binding	MF
GO:0044092	negative regulation of molecular function	BP
GO:0044212	transcription cis-regulatory region binding	MF
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0045892	negative regulation of DNA-templated transcription	BP
GO:0045893	positive regulation of DNA-templated transcription	BP
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0046872	metal ion binding	MF
GO:0046914	transition metal ion binding	MF
GO:0048511	rhythmic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0051090	regulation of DNA-binding transcription factor activity	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051129	negative regulation of cellular component organization	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051248	negative regulation of protein metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051253	negative regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0051346	negative regulation of hydrolase activity	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070076	histone lysine demethylation	BP
GO:0070988	demethylation	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090311	regulation of protein deacetylation	BP
GO:0097159	organic cyclic compound binding	MF
GO:0140030	modification-dependent protein binding	MF
GO:0140034	methylation-dependent protein binding	MF
GO:0140096	catalytic activity, acting on a protein	MF
GO:0140110	transcription regulator activity	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901725	regulation of histone deacetylase activity	BP
GO:1901726	negative regulation of histone deacetylase activity	BP
GO:1902275	regulation of chromatin organization	BP
GO:1902679	negative regulation of RNA biosynthetic process	BP
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903507	negative regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1905268	negative regulation of chromatin organization	BP
GO:1990837	sequence-specific double-stranded DNA binding	MF
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP
GO:2001251	negative regulation of chromosome organization	BP