PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Ppr_779.32020.g View in Genome Browser
Position	scaffold779:2534342-2536922 (+) 2580bp
Gene Type	gene
Gene Description (Protein Product)	elongator complex protein
Organism	Populus pruinosa
Also AS	Potri.010G119600AT1G49540Potri.010G119600.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Ppr_8969.33756.g U3 small nucleolar RNA-associated protein

Ppr_9211.34591.g pumilio homolog

Ppr_779.32544.g Protein SDA1 homolog

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000123	histone acetyltransferase complex	CC
GO:0000502	proteasome complex	CC
GO:0001101	response to acid chemical	BP
GO:0003674	molecular_function	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006351	DNA-templated transcription	BP
GO:0006354	DNA-templated transcription elongation	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006357	regulation of transcription by RNA polymerase II	BP
GO:0006366	transcription by RNA polymerase II	BP
GO:0006368	transcription elongation by RNA polymerase II	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006979	response to oxidative stress	BP
GO:0008023	transcription elongation factor complex	CC
GO:0008047	enzyme activator activity	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008284	positive regulation of cell population proliferation	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009737	response to abscisic acid	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010950	positive regulation of endopeptidase activity	BP
GO:0010952	positive regulation of peptidase activity	BP
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016504	peptidase activator activity	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0022607	cellular component assembly	BP
GO:0030162	regulation of proteolysis	BP
GO:0030234	enzyme regulator activity	MF
GO:0031248	protein acetyltransferase complex	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031347	regulation of defense response	BP
GO:0031349	positive regulation of defense response	BP
GO:0031537	regulation of anthocyanin metabolic process	BP
GO:0031538	negative regulation of anthocyanin metabolic process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032268	regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032774	RNA biosynthetic process	BP
GO:0032991	protein-containing complex	CC
GO:0033588	elongator holoenzyme complex	CC
GO:0033993	response to lipid	BP
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0042127	regulation of cell population proliferation	BP
GO:0042221	response to chemical	BP
GO:0043085	positive regulation of catalytic activity	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043248	proteasome assembly	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044093	positive regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0045862	positive regulation of proteolysis	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0048831	regulation of shoot system development	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0051345	positive regulation of hydrolase activity	BP
GO:0052547	regulation of peptidase activity	BP
GO:0052548	regulation of endopeptidase activity	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061133	endopeptidase activator activity	MF
GO:0061134	peptidase regulator activity	MF
GO:0061135	endopeptidase regulator activity	MF
GO:0065003	protein-containing complex assembly	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0080134	regulation of response to stress	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097305	response to alcohol	BP
GO:0097659	nucleic acid-templated transcription	BP
GO:0098772	molecular function regulator activity	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1902493	acetyltransferase complex	CC
GO:1902494	catalytic complex	CC
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1905368	peptidase complex	CC
GO:1905369	endopeptidase complex	CC
GO:1990234	transferase complex	CC
GO:2000024	regulation of leaf development	BP
GO:2000026	regulation of multicellular organismal development	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP