PPGR - Gene Detail

Basic Information

Gene ID	Ppr_779.32217.g View in Genome Browser
Position	scaffold779:4291518-4304718 (+) 13200bp
Gene Type	gene
Gene Description (Protein Product)	threonine-tRNA ligase
Organism	Populus pruinosa
Also AS	Potri.008G145600AT5G26830Potri.008G145600.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Ppr_88035.33700.g aspartate--tRNA ligase

Ppr_7873.32636.g Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors

Ppr_8434.33388.g Belongs to the class-I aminoacyl-tRNA synthetase family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004812	aminoacyl-tRNA ligase activity	MF
GO:0004829	threonine-tRNA ligase activity	MF
GO:0005575	cellular_component	CC
GO:0005618	cell wall	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005829	cytosol	CC
GO:0005886	plasma membrane	CC
GO:0006082	organic acid metabolic process	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006399	tRNA metabolic process	BP
GO:0006412	translation	BP
GO:0006418	tRNA aminoacylation for protein translation	BP
GO:0006435	threonyl-tRNA aminoacylation	BP
GO:0006518	peptide metabolic process	BP
GO:0006520	amino acid metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0016020	membrane	CC
GO:0016070	RNA metabolic process	BP
GO:0016874	ligase activity	MF
GO:0016875	ligase activity, forming carbon-oxygen bonds	MF
GO:0019538	protein metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0030312	external encapsulating structure	CC
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0043038	amino acid activation	BP
GO:0043039	tRNA aminoacylation	BP
GO:0043043	peptide biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0071944	cell periphery	CC
GO:0090304	nucleic acid metabolic process	BP
GO:0140098	catalytic activity, acting on RNA	MF
GO:0140101	catalytic activity, acting on a tRNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map00970	Aminoacyl-tRNA biosynthesis	-