PPGR - Gene Detail

Basic Information

Gene ID	Ppr_779.32307.g View in Genome Browser
Position	scaffold779:5053519-5054895 (+) 1376bp
Gene Type	gene
Gene Description (Protein Product)	RNA-directed DNA methylation 1
Organism	Populus pruinosa
Also AS	Potri.008G155800AT3G22680Potri.008G155800.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Ppr_910.34065.g DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Ppr_779.32364.g DNA-directed RNA polymerase

Ppr_8282.33242.g DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000419	RNA polymerase V complex	CC
GO:0000428	DNA-directed RNA polymerase complex	CC
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006304	DNA modification	BP
GO:0006305	DNA alkylation	BP
GO:0006306	DNA methylation	BP
GO:0006396	RNA processing	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010629	negative regulation of gene expression	BP
GO:0014070	response to organic cyclic compound	BP
GO:0016070	RNA metabolic process	BP
GO:0016458	obsolete gene silencing	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0030880	RNA polymerase complex	CC
GO:0031047	RNA-mediated gene silencing	BP
GO:0031050	ncRNA processing	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0032259	methylation	BP
GO:0032991	protein-containing complex	CC
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042221	response to chemical	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043331	response to dsRNA	BP
GO:0043412	macromolecule modification	BP
GO:0043414	macromolecule methylation	BP
GO:0043621	protein self-association	MF
GO:0044030	regulation of DNA methylation	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044728	obsolete DNA methylation or demethylation	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048519	negative regulation of biological process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051052	regulation of DNA metabolic process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051716	cellular response to stimulus	BP
GO:0055029	nuclear DNA-directed RNA polymerase complex	CC
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061695	transferase complex, transferring phosphorus-containing groups	CC
GO:0065007	biological regulation	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0070918	regulatory ncRNA processing	BP
GO:0071310	cellular response to organic substance	BP
GO:0071359	cellular response to dsRNA	BP
GO:0071407	cellular response to organic cyclic compound	BP
GO:0071704	organic substance metabolic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901698	response to nitrogen compound	BP
GO:1901699	cellular response to nitrogen compound	BP
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC