PPGR - Gene Detail

Basic Information

Gene ID	Ppr_8725.33646.g View in Genome Browser
Position	scaffold8725:20599-26809 (-) 6210bp
Gene Type	gene
Gene Description (Protein Product)	RNA polymerase II-associated factor 1 homolog
Organism	Populus pruinosa
Also AS	Potri.001G190000AT1G79730Potri.001G190000.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Ppr_896.33769.g Chromatin structure-remodeling complex protein

Ppr_90.33944.g WD repeat-containing protein

Ppr_900.33806.g Transcription elongation factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000428	DNA-directed RNA polymerase complex	CC
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0006325	chromatin organization	BP
GO:0006464	protein modification process	BP
GO:0006479	protein methylation	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0008023	transcription elongation factor complex	CC
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008213	protein alkylation	BP
GO:0009909	regulation of flower development	BP
GO:0009910	negative regulation of flower development	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016571	histone methylation	BP
GO:0016591	RNA polymerase II, holoenzyme	CC
GO:0016593	Cdc73/Paf1 complex	CC
GO:0019538	protein metabolic process	BP
GO:0030880	RNA polymerase complex	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032259	methylation	BP
GO:0032991	protein-containing complex	CC
GO:0036211	protein modification process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0043414	macromolecule methylation	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0048519	negative regulation of biological process	BP
GO:0048580	regulation of post-embryonic development	BP
GO:0048581	negative regulation of post-embryonic development	BP
GO:0048831	regulation of shoot system development	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0051093	negative regulation of developmental process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051241	negative regulation of multicellular organismal process	BP
GO:0051276	chromosome organization	BP
GO:0055029	nuclear DNA-directed RNA polymerase complex	CC
GO:0061695	transferase complex, transferring phosphorus-containing groups	CC
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC
GO:2000026	regulation of multicellular organismal development	BP
GO:2000241	regulation of reproductive process	BP
GO:2000242	negative regulation of reproductive process	BP