Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ppr_900.33864.g
View in Genome Browser
Position
scaffold900:1258935-1260924 (-)
1989bp
Gene Type
gene
Gene Description (Protein Product)
GTP binding
Organism
Populus pruinosa
Also AS Potri.005G007400AT5G14670Potri.005G007400.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ppr_910.33987.g The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Ppr_9211.34597.g phospholipase
Ppr_915.34388.g ADP-ribosylation factor GTPase-activating protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0002090 regulation of receptor internalization BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005794 Golgi apparatus CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0008064 regulation of actin polymerization or depolymerization BP
GO:0008150 biological_process BP
GO:0009987 cellular process BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0019222 regulation of metabolic process BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030030 cell projection organization BP
GO:0030100 regulation of endocytosis BP
GO:0030832 regulation of actin filament length BP
GO:0030833 regulation of actin filament polymerization BP
GO:0031323 regulation of cellular metabolic process BP
GO:0032271 regulation of protein polymerization BP
GO:0032535 regulation of cellular component size BP
GO:0032879 regulation of localization BP
GO:0032956 regulation of actin cytoskeleton organization BP
GO:0032970 regulation of actin filament-based process BP
GO:0033043 regulation of organelle organization BP
GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043254 regulation of protein-containing complex assembly BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0048167 regulation of synaptic plasticity BP
GO:0048259 regulation of receptor-mediated endocytosis BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050804 modulation of chemical synaptic transmission BP
GO:0050805 negative regulation of synaptic transmission BP
GO:0050808 synapse organization BP
GO:0051049 regulation of transport BP
GO:0051125 regulation of actin nucleation BP
GO:0051128 regulation of cellular component organization BP
GO:0051493 regulation of cytoskeleton organization BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060292 long-term synaptic depression BP
GO:0060627 regulation of vesicle-mediated transport BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0090066 regulation of anatomical structure size BP
GO:0097061 dendritic spine organization BP
GO:0099173 postsynapse organization BP
GO:0099177 regulation of trans-synaptic signaling BP
GO:0106027 neuron projection organization BP
GO:0110053 regulation of actin filament organization BP
GO:0120036 plasma membrane bounded cell projection organization BP
GO:1902903 regulation of supramolecular fiber organization BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.