Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ppr_909.33919.g
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Position
scaffold909:143758-147793 (-)
4035bp
Gene Type
gene
Gene Description (Protein Product)
calcium homeostasis endoplasmic reticulum
Organism
Populus pruinosa
Also AS Potri.018G002000AT4G31200Potri.018G002000.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ppr_966.34742.g zinc finger CCCH domain-containing protein
Ppr_9602.34708.g Component of LSM protein complexes, which are involved in RNA processing
Ppr_910.34049.g U2 snRNP-associated SURP motif-containing

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006812 monoatomic cation transport BP
GO:0006816 calcium ion transport BP
GO:0006873 intracellular monoatomic ion homeostasis BP
GO:0006874 intracellular calcium ion homeostasis BP
GO:0006875 obsolete intracellular metal ion homeostasis BP
GO:0007204 positive regulation of cytosolic calcium ion concentration BP
GO:0008150 biological_process BP
GO:0008285 negative regulation of cell population proliferation BP
GO:0009966 regulation of signal transduction BP
GO:0009967 positive regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010646 regulation of cell communication BP
GO:0010647 positive regulation of cell communication BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016528 sarcoplasm CC
GO:0016529 sarcoplasmic reticulum CC
GO:0019725 cellular homeostasis BP
GO:0023051 regulation of signaling BP
GO:0023056 positive regulation of signaling BP
GO:0030001 metal ion transport BP
GO:0030003 intracellular monoatomic cation homeostasis BP
GO:0031090 organelle membrane CC
GO:0031984 organelle subcompartment CC
GO:0032879 regulation of localization BP
GO:0033017 sarcoplasmic reticulum membrane CC
GO:0034220 monoatomic ion transmembrane transport BP
GO:0042127 regulation of cell population proliferation BP
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0042592 homeostatic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044325 transmembrane transporter binding MF
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0048471 perinuclear region of cytoplasm CC
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0048878 chemical homeostasis BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050801 monoatomic ion homeostasis BP
GO:0050848 regulation of calcium-mediated signaling BP
GO:0050850 positive regulation of calcium-mediated signaling BP
GO:0051179 localization BP
GO:0051209 release of sequestered calcium ion into cytosol BP
GO:0051234 establishment of localization BP
GO:0051282 regulation of sequestering of calcium ion BP
GO:0051283 negative regulation of sequestering of calcium ion BP
GO:0051480 regulation of cytosolic calcium ion concentration BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0055065 obsolete metal ion homeostasis BP
GO:0055074 calcium ion homeostasis BP
GO:0055080 monoatomic cation homeostasis BP
GO:0055082 intracellular chemical homeostasis BP
GO:0055085 transmembrane transport BP
GO:0060401 calcium ion transmembrane import into cytosol BP
GO:0060402 calcium ion transport into cytosol BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070588 calcium ion transmembrane transport BP
GO:0070838 metal ion transport BP
GO:0070884 regulation of calcineurin-NFAT signaling cascade BP
GO:0070886 positive regulation of calcineurin-NFAT signaling cascade BP
GO:0072503 obsolete cellular divalent inorganic cation homeostasis BP
GO:0072507 obsolete divalent inorganic cation homeostasis BP
GO:0072511 inorganic cation transmembrane transport BP
GO:0097553 calcium ion transmembrane import into cytosol BP
GO:0098588 bounding membrane of organelle CC
GO:0098655 monoatomic cation transmembrane transport BP
GO:0098660 inorganic ion transmembrane transport BP
GO:0098662 inorganic cation transmembrane transport BP
GO:0098771 inorganic ion homeostasis BP
GO:0098827 endoplasmic reticulum subcompartment CC
GO:0106056 regulation of calcineurin-mediated signaling BP
GO:0106058 positive regulation of calcineurin-mediated signaling BP
GO:1902531 regulation of intracellular signal transduction BP
GO:1902533 positive regulation of intracellular signal transduction BP
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.