Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-POTOM_001150
View in Genome Browser
Position
CM031968.1:11719798-11722090 (+)
2292bp
Gene Type
gene
Gene Description (Protein Product)
zinc finger CCCH domain-containing protein
Organism
Populus tomentosa
Also AS Potri.001G140800AT1G32360Potri.001G140800.v4.1

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-POTOM_054115 Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
gene-POTOM_055312 Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
gene-POTOM_017250 Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Regulatory gene
gene-POTOM_001090 GAGA binding protein-like family
gene-POTOM_017755 Protein BASIC PENTACYSTEINE4-like
gene-POTOM_022058 Protein BASIC PENTACYSTEINE6-like
Target gene
gene-POTOM_000116 Bulb-type mannose-specific lectin
gene-POTOM_000121 Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding
gene-POTOM_001178 Protein ABCI7, chloroplastic-like

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003700 DNA-binding transcription factor activity MF
GO:0003723 RNA binding MF
GO:0003729 mRNA binding MF
GO:0003730 mRNA 3'-UTR binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006355 regulation of DNA-templated transcription BP
GO:0006417 regulation of translation BP
GO:0008150 biological_process BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0010629 negative regulation of gene expression BP
GO:0017148 negative regulation of translation BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0034248 regulation of amide metabolic process BP
GO:0034249 negative regulation of amide metabolic process BP
GO:0043487 regulation of RNA stability BP
GO:0043488 regulation of mRNA stability BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0050779 RNA destabilization BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061013 regulation of mRNA catabolic process BP
GO:0061014 positive regulation of mRNA catabolic process BP
GO:0061157 mRNA destabilization BP
GO:0061158 3'-UTR-mediated mRNA destabilization BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0080090 regulation of primary metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0140110 transcription regulator activity MF
GO:1901363 heterocyclic compound binding MF
GO:1903311 regulation of mRNA metabolic process BP
GO:1903313 positive regulation of mRNA metabolic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP