Basic Information
Gene ID
gene-POTOM_002399
Position
CM031968.1:29871696-29875448 (-)
3752bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 3B subunit
Organism
Also AS Potri.001G310900AT5G64270Potri.001G310900.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-POTOM_019026 splicing factor 3A subunit
gene-POTOM_021016 splicing factor 3A subunit
gene-POTOM_049574 U5 small nuclear ribonucleoprotein 200 kDa
Regulatory gene
gene-POTOM_000145 AP2-like ethylene-responsive transcription factor
gene-POTOM_000682 Dof zinc finger protein
gene-POTOM_001386 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.