Basic Information
Gene ID
gene-POTOM_043133
Position
CM031991.1:7981144-7990150 (+)
9006bp
Gene Type
gene
Gene Description (Protein Product)
Exosome complex component
Organism
Also AS Potri.012G080300AT4G32175Potri.012G080300.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-POTOM_048089 Exosome complex component
gene-POTOM_046647 Exosome complex component
gene-POTOM_051342 Ribosomal RNA small subunit methyltransferase
Regulatory gene
gene-POTOM_000682 Dof zinc finger protein
gene-POTOM_004027 Agamous-like MADS-box protein AGL9 homolog
gene-POTOM_004231 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.