Basic Information
Gene ID
gene-POTOM_044737
Position
CM031992.1:12533691-12534053 (+)
362bp
Gene Type
gene
Gene Description (Protein Product)
Calcium-binding protein PBP1-like
Organism
Also AS Potri.013G151000AT5G54490Potri.013G151000.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-POTOM_054054 Ubiquitin receptor
gene-POTOM_055252 Ubiquitin receptor
gene-POTOM_053709 DNA repair protein
Regulatory gene
gene-POTOM_000682 Dof zinc finger protein
gene-POTOM_002487 B3 domain-containing transcription factor
gene-POTOM_003033 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.