Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-POTOM_048389
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Position
CM031995.1:8475499-8478416 (+)
2917bp
Gene Type
gene
Gene Description (Protein Product)
LSM domain
Organism
Populus tomentosa
Also AS Potri.002G204300AT3G62840Potri.002G204300.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-POTOM_053388 U11 U12 small nuclear ribonucleoprotein 35 kDa
gene-POTOM_054613 U11 U12 small nuclear ribonucleoprotein 35 kDa
gene-POTOM_059745 U4 U6 small nuclear ribonucleoprotein
Regulatory gene
gene-POTOM_000027 ethylene-responsive transcription factor
gene-POTOM_000375 transcription factor
gene-POTOM_000525 ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.