Basic Information
Gene ID
gene-POTOM_051082
Position
CM031998.1:108827-118138 (-)
9311bp
Gene Type
gene
Gene Description (Protein Product)
"WD40 region of Ge1
Organism
Also AS Potri.016G002100AT3G13300Potri.016G002100.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-POTOM_058055 General negative regulator of transcription subunit
gene-POTOM_059028 General negative regulator of transcription subunit
gene-POTOM_055691 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome
Regulatory gene
gene-POTOM_001090 GAGA binding protein-like family
gene-POTOM_004027 Agamous-like MADS-box protein AGL9 homolog
gene-POTOM_007841 MADS-box transcription factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.