Basic Information
Gene ID
gene-POTOM_053557
Position
CM032000.1:3526965-3533007 (-)
6042bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 3B subunit
Organism
Also AS Potri.017G050800AT5G64270Potri.017G050800.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-POTOM_055604 calcium homeostasis endoplasmic reticulum
gene-POTOM_055547 Translocation protein SEC63 homolog
gene-POTOM_054360 Translocation protein SEC63 homolog

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.