Basic Information
Gene ID
Potra2n10c20155
Position
chr10:327400-332198 (-)
4798bp
Gene Type
gene
Gene Description (Protein Product)
U1 small nuclear ribonucleoprotein
Organism
Also AS Potri.010G249700AT3G21215Potri.010G249700.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n6c12918 serine arginine-rich splicing factor
Potra2n18c33173 serine arginine-rich splicing factor
Regulatory gene
Potra2n10c20356 Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis
Potra2n10c20357 No apical meristem (NAM) protein
Potra2n10c20424 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003729 mRNA binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008284 positive regulation of cell population proliferation BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009887 animal organ morphogenesis BP
GO:0009889 regulation of biosynthetic process BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030510 regulation of BMP signaling pathway BP
GO:0030514 negative regulation of BMP signaling pathway BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0035239 tube morphogenesis BP
GO:0035295 tube development BP
GO:0042127 regulation of cell population proliferation BP
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0045595 regulation of cell differentiation BP
GO:0045596 negative regulation of cell differentiation BP
GO:0046983 protein dimerization activity MF
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048546 digestive tract morphogenesis BP
GO:0048557 embryonic digestive tract morphogenesis BP
GO:0048562 embryonic organ morphogenesis BP
GO:0048565 digestive tract development BP
GO:0048566 embryonic digestive tract development BP
GO:0048568 embryonic organ development BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048598 embryonic morphogenesis BP
GO:0048660 regulation of smooth muscle cell proliferation BP
GO:0048661 positive regulation of smooth muscle cell proliferation BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051093 negative regulation of developmental process BP
GO:0051147 regulation of muscle cell differentiation BP
GO:0051148 negative regulation of muscle cell differentiation BP
GO:0051150 regulation of smooth muscle cell differentiation BP
GO:0051151 negative regulation of smooth muscle cell differentiation BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0055123 digestive system development BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0080090 regulation of primary metabolic process BP
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway BP
GO:0090101 negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway BP
GO:0090287 regulation of cellular response to growth factor stimulus BP
GO:0090288 negative regulation of cellular response to growth factor stimulus BP
GO:0097159 organic cyclic compound binding MF
GO:1901363 heterocyclic compound binding MF
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP