PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	Potra2n16c30342 View in Genome Browser
Position	chr16:11150680-11160062 (-) 9382bp
Gene Type	gene
Gene Description (Protein Product)	Protein trichome birefringence-like 3
Organism	Populus tremula
Also AS	Potri.016G119100AT5G01360Potri.016G119100.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Potra2n4c10402 Polysaccharide biosynthesis Potra2n19c33698 Glucuronoxylan 4-O-methyltransferase Potra2n1c95 Family of unknown function (DUF716)
Regulatory gene	Potra2n10c20596 Dof zinc finger protein Potra2n10c20731 B3 domain-containing Potra2n10c20949 Cyclic dof factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000271	polysaccharide biosynthetic process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005794	Golgi apparatus	CC
GO:0005886	plasma membrane	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0005976	polysaccharide metabolic process	BP
GO:0006073	cellular glucan metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008374	O-acyltransferase activity	MF
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009250	glucan biosynthetic process	BP
GO:0009664	plant-type cell wall organization	BP
GO:0009827	plant-type cell wall modification	BP
GO:0009987	cellular process	BP
GO:0010383	cell wall polysaccharide metabolic process	BP
GO:0010393	galacturonan metabolic process	BP
GO:0010410	hemicellulose metabolic process	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016051	carbohydrate biosynthetic process	BP
GO:0016407	acetyltransferase activity	MF
GO:0016413	O-acetyltransferase activity	MF
GO:0016740	transferase activity	MF
GO:0016746	acyltransferase activity	MF
GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0030243	cellulose metabolic process	BP
GO:0030244	cellulose biosynthetic process	BP
GO:0033692	cellular polysaccharide biosynthetic process	BP
GO:0034637	cellular carbohydrate biosynthetic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0042545	cell wall modification	BP
GO:0042546	cell wall biogenesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044036	cell wall macromolecule metabolic process	BP
GO:0044038	cell wall macromolecule biosynthetic process	BP
GO:0044042	glucan metabolic process	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044262	cellular carbohydrate metabolic process	BP
GO:0044264	cellular polysaccharide metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0045229	external encapsulating structure organization	BP
GO:0045488	pectin metabolic process	BP
GO:0045489	pectin biosynthetic process	BP
GO:0045491	xylan metabolic process	BP
GO:0045492	xylan biosynthetic process	BP
GO:0051273	beta-glucan metabolic process	BP
GO:0051274	beta-glucan biosynthetic process	BP
GO:0070589	cellular component macromolecule biosynthetic process	BP
GO:0070592	cell wall polysaccharide biosynthetic process	BP
GO:0071554	cell wall organization or biogenesis	BP
GO:0071555	cell wall organization	BP
GO:0071669	plant-type cell wall organization or biogenesis	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:1901576	organic substance biosynthetic process	BP
GO:1990538	xylan O-acetyltransferase activity	MF