Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potra2n17c31461
View in Genome Browser
Position
chr17:10103836-10108333 (-)
4497bp
Gene Type
gene
Gene Description (Protein Product)
Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament
Organism
Populus tremula
Also AS Potri.017G057400AT4G14147Potri.017G057400.v4.1

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n1c588 Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
Potra2n3c7080 Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
Potra2n2c5173 Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
Regulatory gene
Potra2n10c21556 Protein BASIC PENTACYSTEINE2-like
Potra2n12c24053 GAGA binding protein-like family
Potra2n12c24055 GAGA binding protein-like family

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005856 cytoskeleton CC
GO:0005885 Arp2/3 protein complex CC
GO:0005938 cell cortex CC
GO:0006810 transport BP
GO:0006887 exocytosis BP
GO:0006897 endocytosis BP
GO:0006909 phagocytosis BP
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007015 actin filament organization BP
GO:0008064 regulation of actin polymerization or depolymerization BP
GO:0008150 biological_process BP
GO:0008154 actin polymerization or depolymerization BP
GO:0009987 cellular process BP
GO:0010638 positive regulation of organelle organization BP
GO:0012506 vesicle membrane CC
GO:0015629 actin cytoskeleton CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016192 vesicle-mediated transport BP
GO:0022607 cellular component assembly BP
GO:0030029 actin filament-based process BP
GO:0030036 actin cytoskeleton organization BP
GO:0030041 actin filament polymerization BP
GO:0030139 endocytic vesicle CC
GO:0030175 filopodium CC
GO:0030659 cytoplasmic vesicle membrane CC
GO:0030666 endocytic vesicle membrane CC
GO:0030670 phagocytic vesicle membrane CC
GO:0030832 regulation of actin filament length BP
GO:0030833 regulation of actin filament polymerization BP
GO:0030838 positive regulation of actin filament polymerization BP
GO:0030863 cortical cytoskeleton CC
GO:0030864 cortical actin cytoskeleton CC
GO:0031090 organelle membrane CC
GO:0031143 pseudopodium CC
GO:0031252 cell leading edge CC
GO:0031334 positive regulation of protein-containing complex assembly BP
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032271 regulation of protein polymerization BP
GO:0032273 positive regulation of protein polymerization BP
GO:0032535 regulation of cellular component size BP
GO:0032940 secretion by cell BP
GO:0032956 regulation of actin cytoskeleton organization BP
GO:0032970 regulation of actin filament-based process BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0034622 protein-containing complex assembly BP
GO:0042995 cell projection CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043254 regulation of protein-containing complex assembly BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044089 positive regulation of cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044448 obsolete cell cortex part CC
GO:0044464 obsolete cell part CC
GO:0045010 actin nucleation BP
GO:0045335 phagocytic vesicle CC
GO:0046903 secretion BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051258 protein polymerization BP
GO:0051493 regulation of cytoskeleton organization BP
GO:0051495 positive regulation of cytoskeleton organization BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0090066 regulation of anatomical structure size BP
GO:0097435 supramolecular fiber organization BP
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098657 import into cell BP
GO:0098805 membrane CC
GO:0098858 actin-based cell projection CC
GO:0099568 cytoplasmic region CC
GO:0110053 regulation of actin filament organization BP
GO:0120025 plasma membrane bounded cell projection CC
GO:1902903 regulation of supramolecular fiber organization BP
GO:1902905 positive regulation of supramolecular fiber organization BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.