PPGR - Gene Detail

Basic Information

Gene ID	Potra2n1c2619 View in Genome Browser
Position	chr1:31098609-31101095 (+) 2486bp
Gene Type	gene
Gene Description (Protein Product)	Cinnamyl alcohol dehydrogenase
Organism	Populus tremula
Also AS	Potri.009G095800AT4G34230AT3G19450Potri.009G095800.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Potra2n2c6163 Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Potra2n6c14170 Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Potra2n2c6292 Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Regulatory gene

Potra2n10c20146 GATA transcription factor

Potra2n10c20423 Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Potra2n10c20596 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009698	phenylpropanoid metabolic process	BP
GO:0009699	phenylpropanoid biosynthetic process	BP
GO:0009808	lignin metabolic process	BP
GO:0009809	lignin biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	MF
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	MF
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019748	secondary metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0044550	secondary metabolite biosynthetic process	BP
GO:0045551	cinnamyl-alcohol dehydrogenase activity	MF
GO:0050896	response to stimulus	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:0080167	response to karrikin	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00940	Phenylpropanoid biosynthesis	Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.