PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	Potra2n1c3066 View in Genome Browser
Position	chr1:36514520-36520359 (-) 5839bp
Gene Type	gene
Gene Description (Protein Product)	Phosphoglucan phosphatase LSF1
Organism	Populus tremula
Also AS	Potri.001G349000AT3G01510Potri.001G349000.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Potra2n8c18547 Sucrose nonfermenting 4-like Potra2n4c9738 Belongs to the protein kinase superfamily Potra2n9c19178 Belongs to the protein kinase superfamily
Regulatory gene	Potra2n10c20596 Dof zinc finger protein Potra2n10c20731 B3 domain-containing Potra2n10c20949 Cyclic dof factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000272	polysaccharide catabolic process	BP
GO:0001871	obsolete pattern binding	MF
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005789	endoplasmic reticulum membrane	CC
GO:0005791	rough endoplasmic reticulum	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0005976	polysaccharide metabolic process	BP
GO:0005977	glycogen metabolic process	BP
GO:0005982	starch metabolic process	BP
GO:0005983	starch catabolic process	BP
GO:0006073	cellular glucan metabolic process	BP
GO:0006091	generation of precursor metabolites and energy	BP
GO:0006112	energy reserve metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009251	glucan catabolic process	BP
GO:0009507	chloroplast	CC
GO:0009532	plastid stroma	CC
GO:0009536	plastid	CC
GO:0009569	chloroplast starch grain	CC
GO:0009570	chloroplast stroma	CC
GO:0009987	cellular process	BP
GO:0012505	endomembrane system	CC
GO:0015980	energy derivation by oxidation of organic compounds	BP
GO:0016020	membrane	CC
GO:0016052	carbohydrate catabolic process	BP
GO:0016311	dephosphorylation	BP
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0016791	phosphatase activity	MF
GO:0019203	carbohydrate phosphatase activity	MF
GO:0030246	carbohydrate binding	MF
GO:0030247	polysaccharide binding	MF
GO:0030867	rough endoplasmic reticulum membrane	CC
GO:0031090	organelle membrane	CC
GO:0031984	organelle subcompartment	CC
GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	CC
GO:0042578	phosphoric ester hydrolase activity	MF
GO:0043036	starch grain	CC
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044042	glucan metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044247	cellular polysaccharide catabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044262	cellular carbohydrate metabolic process	BP
GO:0044264	cellular polysaccharide metabolic process	BP
GO:0044275	cellular carbohydrate catabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046838	phosphorylated carbohydrate dephosphorylation	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:0098552	side of membrane	CC
GO:0098554	cytoplasmic side of endoplasmic reticulum membrane	CC
GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	CC
GO:0098562	cytoplasmic side of membrane	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098827	endoplasmic reticulum subcompartment	CC
GO:1901575	organic substance catabolic process	BP
GO:2001069	glycogen binding	MF