Basic Information
Gene ID
Position
chr2:7653436-7660063 (-)
6627bp
Gene Type
gene
Gene Description (Protein Product)
RNA recognition motif
pre-mRNA-splicing factor
Organism
Also AS Potri.002G205025AT1G02840Potri.002G205025.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n6c12918 serine arginine-rich splicing factor
Potra2n7c16393 U1 small nuclear ribonucleoprotein 70
Regulatory gene
Potra2n10c20360 ZINC FINGER protein
Potra2n10c20407 lysine-specific demethylase
Potra2n10c20555 ZINC FINGER protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.