Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potra2n3c7029
View in Genome Browser
Position
chr3:4960647-4971090 (-)
10443bp
Gene Type
gene
Gene Description (Protein Product)
ADP-ribosylation factor GTPase-activating protein
Organism
Populus tremula
Also AS Potri.003G163200AT5G13300Potri.003G163200.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n3c7223 Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Potra2n8c18055 Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like
Potra2n5c10947 Type I inositol 1,4,5-trisphosphate 5-phosphatase
Regulatory gene
Potra2n10c20306 Trihelix transcription factor
Potra2n10c20324 Amino acid kinase family
Potra2n10c20596 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003002 regionalization BP
GO:0003674 molecular_function MF
GO:0005096 GTPase activator activity MF
GO:0005488 binding MF
GO:0005543 phospholipid binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005798 Golgi-associated vesicle CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0006810 transport BP
GO:0006897 endocytosis BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008047 enzyme activator activity MF
GO:0008150 biological_process BP
GO:0008289 lipid binding MF
GO:0009653 anatomical structure morphogenesis BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009733 response to auxin BP
GO:0009888 tissue development BP
GO:0009965 leaf morphogenesis BP
GO:0010016 shoot system morphogenesis BP
GO:0010033 response to organic substance BP
GO:0010051 xylem and phloem pattern formation BP
GO:0010087 phloem or xylem histogenesis BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016192 vesicle-mediated transport BP
GO:0030133 transport vesicle CC
GO:0030135 coated vesicle CC
GO:0030136 clathrin-coated vesicle CC
GO:0030140 trans-Golgi network transport vesicle CC
GO:0030234 enzyme regulator activity MF
GO:0030695 GTPase regulator activity MF
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0035091 phosphatidylinositol binding MF
GO:0042221 response to chemical BP
GO:0043085 positive regulation of catalytic activity BP
GO:0043087 regulation of GTPase activity BP
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043547 positive regulation of GTPase activity BP
GO:0044093 positive regulation of molecular function BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0050790 regulation of catalytic activity BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051336 regulation of hydrolase activity BP
GO:0051345 positive regulation of hydrolase activity BP
GO:0060589 nucleoside-triphosphatase regulator activity MF
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0071944 cell periphery CC
GO:0097708 intracellular vesicle CC
GO:0098657 import into cell BP
GO:0098772 molecular function regulator activity MF
GO:0099402 plant organ development BP
GO:1905392 plant organ morphogenesis BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.