Basic Information
Gene ID
Position
chr4:1479159-1480711 (-)
1552bp
Gene Type
gene
Gene Description (Protein Product)
"Ubiquitin exists either covalently attached to another protein
Ubiquitin family
Organism
Also AS Potri.011G026600Potri.004G021500AT4G05050AT4G02890Potri.011G026600.v4.1Potri.004G021500.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n669s36357 ubiquitin-60S ribosomal protein
Potra2n6c14354 ubiquitin-conjugating enzyme
Potra2n6c14354 Belongs to the ubiquitin-conjugating enzyme family
Regulatory gene
Potra2n10c20932 Zinc-finger homeodomain protein
Potra2n10c21715 Protein tesmin TSO1-like CXC
Potra2n12c24058 Zinc-finger homeodomain protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map04120 Ubiquitin mediated proteolysis Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.