PPGR - Gene Detail

Gene ID	Potra2n5c11522 View in Genome Browser
Position	chr5:9894752-9902882 (-) 8130bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the protein kinase superfamily
Organism	Populus tremula
Also AS	Potri.005G146000AT2G23070Potri.005G146000.v4.1

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	Potra2n7c16173 Belongs to the protein kinase superfamily Potra2n5c11523 belongs to the protein kinase superfamily Potra2n9c19106 Guanine nucleotide-binding protein subunit
Regulatory gene	Potra2n10c20596 Dof zinc finger protein Potra2n10c20949 Cyclic dof factor Potra2n10c20952 MADS-box transcription factor

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005730	nucleolus	CC
GO:0008150	biological_process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0042752	regulation of circadian rhythm	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0050789	regulation of biological process	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC

KEGG Term	Name	Description
map04712	Circadian rhythm - plant	-
map03008	Ribosome biogenesis in eukaryotes	Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.