Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potra2n5c11808
View in Genome Browser
Position
chr5:12960159-12960863 (+)
704bp
Gene Type
gene
Gene Description (Protein Product)
Cold shock protein
Organism
Populus tremula
Also AS Potri.005G112800AT4G36020Potri.005G112800.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n6c13472 Small nuclear ribonucleoprotein
Potra2n6c13821 Small nuclear ribonucleoprotein
Potra2n9c19507 Pre-mRNA branch site p14-like
Regulatory gene
Potra2n10c20596 Dof zinc finger protein
Potra2n10c20949 Cyclic dof factor
Potra2n11c23230 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000902 cell morphogenesis BP
GO:0001101 response to acid chemical BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003697 single-stranded DNA binding MF
GO:0003723 RNA binding MF
GO:0003729 mRNA binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006970 response to osmotic stress BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009266 response to temperature stimulus BP
GO:0009409 response to cold BP
GO:0009414 response to water deprivation BP
GO:0009415 response to water BP
GO:0009628 response to abiotic stimulus BP
GO:0009631 cold acclimation BP
GO:0009651 response to salt stress BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009826 unidimensional cell growth BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0010501 RNA secondary structure unwinding BP
GO:0016043 cellular component organization BP
GO:0016049 cell growth BP
GO:0016070 RNA metabolic process BP
GO:0032392 DNA geometric change BP
GO:0032502 developmental process BP
GO:0032508 DNA duplex unwinding BP
GO:0032989 cellular component morphogenesis BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0040007 growth BP
GO:0042221 response to chemical BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0048589 developmental growth BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050896 response to stimulus BP
GO:0051276 chromosome organization BP
GO:0060560 developmental growth involved in morphogenesis BP
GO:0071103 DNA conformation change BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901700 response to oxygen-containing compound BP