Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potra2n6c13485
View in Genome Browser
Position
chr6:5231683-5236811 (-)
5128bp
Gene Type
gene
Gene Description (Protein Product)
sorting nexin
Organism
Populus tremula
Also AS Potri.006G209600AT5G06140Potri.006G209600.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n6c14634 Vacuolar protein sorting-associated protein
Potra2n9c19947 Vacuolar protein sorting-associated protein
Potra2n9c19560 Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Regulatory gene
Potra2n10c20146 GATA transcription factor
Potra2n10c20360 ZINC FINGER protein
Potra2n10c20407 lysine-specific demethylase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000139 Golgi membrane CC
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005543 phospholipid binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005770 late endosome CC
GO:0005771 multivesicular body CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0005829 cytosol CC
GO:0006605 protein targeting BP
GO:0006623 protein targeting to vacuole BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006892 post-Golgi vesicle-mediated transport BP
GO:0006896 Golgi to vacuole transport BP
GO:0006897 endocytosis BP
GO:0006996 organelle organization BP
GO:0007034 vacuolar transport BP
GO:0007041 lysosomal transport BP
GO:0007275 multicellular organism development BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008289 lipid binding MF
GO:0008333 endosome to lysosome transport BP
GO:0009605 response to external stimulus BP
GO:0009606 tropism BP
GO:0009628 response to abiotic stimulus BP
GO:0009629 response to gravity BP
GO:0009630 gravitropism BP
GO:0009958 positive gravitropism BP
GO:0009987 cellular process BP
GO:0010008 endosome membrane CC
GO:0010252 auxin homeostasis BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016050 vesicle organization BP
GO:0016192 vesicle-mediated transport BP
GO:0019898 extrinsic component of membrane CC
GO:0022622 root system development BP
GO:0030904 retromer complex CC
GO:0031090 organelle membrane CC
GO:0031410 cytoplasmic vesicle CC
GO:0031902 late endosome membrane CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032588 trans-Golgi network membrane CC
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0034613 protein localization BP
GO:0035091 phosphatidylinositol binding MF
GO:0042592 homeostatic process BP
GO:0042886 amide transport BP
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044440 obsolete endosomal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0046907 intracellular transport BP
GO:0048193 Golgi vesicle transport BP
GO:0048364 root development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048878 chemical homeostasis BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072594 establishment of protein localization to organelle BP
GO:0072665 protein localization to vacuole BP
GO:0072666 establishment of protein localization to vacuole BP
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098657 import into cell BP
GO:0098791 Golgi apparatus subcompartment CC
GO:0098796 membrane protein complex CC
GO:0098805 membrane CC
GO:0099402 plant organ development BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.