PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	Potra2n6c13562 View in Genome Browser
Position	chr6:5959850-5967537 (-) 7687bp
Gene Type	gene
Gene Description (Protein Product)	Nuclear transcription factor Y subunit 33 kDa ribonucleoprotein
Organism	Populus tremula
Also AS	Potri.006G201900Potri.006G202000AT5G06510AT3G52380Potri.006G201900.v4.1Potri.006G202000.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Potra2n7c16024 Nuclear transcription factor Y subunit Potra2n6c14033 Nuclear transcription factor Y subunit Potra2n9c19661 Nuclear transcription factor Y subunit
Regulatory gene	Potra2n10c20596 Dof zinc finger protein Potra2n10c20932 Zinc-finger homeodomain protein Potra2n10c20949 Cyclic dof factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003674	molecular_function	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005667	transcription regulator complex	CC
GO:0006355	regulation of DNA-templated transcription	BP
GO:0008150	biological_process	BP
GO:0009566	fertilization	BP
GO:0009567	double fertilization forming a zygote and endosperm	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0016602	CCAAT-binding factor complex	CC
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019953	sexual reproduction	BP
GO:0022414	reproductive process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0032991	protein-containing complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0044798	transcription regulator complex	CC
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090575	RNA polymerase II transcription regulator complex	CC
GO:0140110	transcription regulator activity	MF
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003729	mRNA binding	MF
GO:0005488	binding	MF
GO:0005737	cytoplasm	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008152	metabolic process	BP
GO:0009507	chloroplast	CC
GO:0009532	plastid stroma	CC
GO:0009536	plastid	CC
GO:0009570	chloroplast stroma	CC
GO:0009579	thylakoid	CC
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0016070	RNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0031425	chloroplast RNA processing	BP
GO:0034470	ncRNA processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042254	ribosome biogenesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901259	chloroplast rRNA processing	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF