Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potra2n6c14014
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Position
chr6:11657014-11678160 (+)
21146bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the disease resistance NB-LRR family
Lycopene epsilon cyclase
Organism
Populus tremula
Also AS Potri.006G147300Potri.006G147100AT5G57030AT4G26090Potri.006G147300.v4.1Potri.006G147100.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n6c14261 Belongs to the cytochrome P450 family
Potra2n6c14261 Nuclear pore complex protein
Potra2n6c15041 Lycopene beta cyclase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0006629 lipid metabolic process BP
GO:0006720 isoprenoid metabolic process BP
GO:0006721 terpenoid metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008299 isoprenoid biosynthetic process BP
GO:0008610 lipid biosynthetic process BP
GO:0009058 biosynthetic process BP
GO:0009975 cyclase activity MF
GO:0009987 cellular process BP
GO:0016108 tetraterpenoid metabolic process BP
GO:0016109 tetraterpenoid biosynthetic process BP
GO:0016114 terpenoid biosynthetic process BP
GO:0016116 carotenoid metabolic process BP
GO:0016117 carotenoid biosynthetic process BP
GO:0016122 xanthophyll metabolic process BP
GO:0016123 xanthophyll biosynthetic process BP
GO:0016853 isomerase activity MF
GO:0016860 intramolecular oxidoreductase activity MF
GO:0042440 pigment metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0045435 lycopene epsilon cyclase activity MF
GO:0046148 pigment biosynthetic process BP
GO:0071704 organic substance metabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:0002376 immune system process BP
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006955 immune response BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0008219 cell death BP
GO:0009595 detection of biotic stimulus BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009626 plant-type hypersensitive response BP
GO:0012501 programmed cell death BP
GO:0016020 membrane CC
GO:0016045 detection of bacterium BP
GO:0023052 signaling BP
GO:0033554 cellular response to stress BP
GO:0034050 programmed cell death induced by symbiont BP
GO:0042742 defense response to bacterium BP
GO:0043207 response to external biotic stimulus BP
GO:0044464 obsolete cell part CC
GO:0045087 innate immune response BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051606 detection of stimulus BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0065007 biological regulation BP
GO:0071944 cell periphery CC
GO:0098542 defense response to other organism BP
GO:0098543 detection of other organism BP
GO:0098581 detection of external biotic stimulus BP
KEGG Term Name Description
map04626 Plant-pathogen interaction Plants lack animal-like adaptive immunity mechanisms, and therefore have evolved a specific system with multiple layers against invading pathogens. The primary response includes the perception of pathogens by cell-surface pattern-recognition receptors (PRRs) and is referred to as PAMP-triggered immunity (PTI). Activation of FLS2 and EFR triggers MAPK signaling pathway that activates defense genes for antimictobial compounds. The increase in the cytosolic Ca2+ concentration is also a regulator for production of reactive oxygen species and localized programmed cell death/hypersensitive response. The secondary response is called effector-triggered immunity (ETI). Pathogens can acquire the ability to suppress PTI by directly injecting effector proteins into the plant cell through secretion systems. In addition, pathogens can manipulate plant hormone signaling pathways to evade host immune responses using coronatine toxin. Some plants possess specific intracellular surveillance proteins (R proteins) to monitor the presence of pathogen virulence proteins. This ETI occurs with localized programmed cell death to arrest pathogen growth, resulting in cultivar-specific disease resistance.
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00906 Carotenoid biosynthesis -