PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	Potra2n7c15460 View in Genome Browser
Position	chr7:542331-552546 (+) 10215bp
Gene Type	gene
Gene Description (Protein Product)	Transmembrane E3 ubiquitin-protein ligase 1-like
Organism	Populus tremula
Also AS	Potri.007G139300AT4G28370Potri.007G139300.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Potra2n8c17475 Methyltransferase

Potra2n8c17475 Belongs to the 14-3-3 family

Potra2n8c18254 Signal peptidase complex subunit

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000209	protein polyubiquitination	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004842	ubiquitin-protein transferase activity	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0005976	polysaccharide metabolic process	BP
GO:0006464	protein modification process	BP
GO:0006508	proteolysis	BP
GO:0006511	ubiquitin-dependent protein catabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009664	plant-type cell wall organization	BP
GO:0009791	post-embryonic development	BP
GO:0009827	plant-type cell wall modification	BP
GO:0009845	seed germination	BP
GO:0009987	cellular process	BP
GO:0010154	fruit development	BP
GO:0010191	mucilage metabolic process	BP
GO:0010393	galacturonan metabolic process	BP
GO:0010498	proteasomal protein catabolic process	BP
GO:0012505	endomembrane system	CC
GO:0016043	cellular component organization	BP
GO:0016567	protein ubiquitination	BP
GO:0016740	transferase activity	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019787	ubiquitin-like protein transferase activity	MF
GO:0019941	modification-dependent protein catabolic process	BP
GO:0022414	reproductive process	BP
GO:0030163	protein catabolic process	BP
GO:0032446	protein modification by small protein conjugation	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0036211	protein modification process	BP
GO:0042545	cell wall modification	BP
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043412	macromolecule modification	BP
GO:0043632	modification-dependent macromolecule catabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044257	protein catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044464	obsolete cell part	CC
GO:0045229	external encapsulating structure organization	BP
GO:0045488	pectin metabolic process	BP
GO:0048316	seed development	BP
GO:0048363	mucilage pectin metabolic process	BP
GO:0048608	reproductive structure development	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0051603	proteolysis involved in protein catabolic process	BP
GO:0061458	reproductive system development	BP
GO:0061630	ubiquitin protein ligase activity	MF
GO:0061659	ubiquitin-like protein ligase activity	MF
GO:0070647	protein modification by small protein conjugation or removal	BP
GO:0071554	cell wall organization or biogenesis	BP
GO:0071555	cell wall organization	BP
GO:0071669	plant-type cell wall organization or biogenesis	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080001	mucilage extrusion from seed coat	BP
GO:0090351	seedling development	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP