PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	Potra2n7c15744 View in Genome Browser
Position	chr7:2763417-2768540 (+) 5123bp
Gene Type	gene
Gene Description (Protein Product)	U3 small nucleolar RNA-interacting protein
Organism	Populus tremula
Also AS	Potri.007G107900AT4G05410Potri.007G107900.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Potra2n9c19906 RNase P subunit p30

Potra2n8c17628 H ACA ribonucleoprotein complex subunit 2-like

Potra2n9c18727 Pre-rRNA-processing protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000151	ubiquitin ligase complex	CC
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005730	nucleolus	CC
GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007154	cell communication	BP
GO:0007275	multicellular organism development	BP
GO:0008037	cell recognition	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009553	embryo sac development	BP
GO:0009790	embryo development	BP
GO:0009791	post-embryonic development	BP
GO:0009793	embryo development ending in seed dormancy	BP
GO:0009856	pollination	BP
GO:0009875	pollen-pistil interaction	BP
GO:0009987	cellular process	BP
GO:0010154	fruit development	BP
GO:0010467	gene expression	BP
GO:0016070	RNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0022414	reproductive process	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0030515	snoRNA binding	MF
GO:0030684	preribosome	CC
GO:0031428	box C/D RNP complex	CC
GO:0031461	cullin-RING ubiquitin ligase complex	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032040	small-subunit processome	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032991	protein-containing complex	CC
GO:0034470	ncRNA processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042254	ribosome biogenesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044452	obsolete nucleolar part	CC
GO:0044464	obsolete cell part	CC
GO:0044706	multi-multicellular organism process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048229	gametophyte development	BP
GO:0048316	seed development	BP
GO:0048544	recognition of pollen	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0051704	obsolete multi-organism process	BP
GO:0060321	acceptance of pollen	BP
GO:0061458	reproductive system development	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080008	Cul4-RING E3 ubiquitin ligase complex	CC
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC
GO:1990904	ribonucleoprotein complex	CC