Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potra2n7c15864
View in Genome Browser
Position
chr7:3766722-3773251 (+)
6529bp
Gene Type
gene
Gene Description (Protein Product)
polyadenylate-binding protein
ABC transporter G family member
Organism
Populus tremula
Also AS Potri.005G073050Potri.007G095800AT3G21090AT5G10350Potri.005G073050.v4.1Potri.007G095800.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n8c17510 Floral homeotic protein APETALA
Potra2n8c17510
Potra2n9c19007 Transcription initiation factor TFIID subunit

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0001101 response to acid chemical BP
GO:0003002 regionalization BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005215 transporter activity MF
GO:0005319 lipid transporter activity MF
GO:0005342 organic acid transmembrane transporter activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006820 monoatomic anion transport BP
GO:0006869 lipid transport BP
GO:0006950 response to stress BP
GO:0006970 response to osmotic stress BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008028 monocarboxylic acid transmembrane transporter activity MF
GO:0008150 biological_process BP
GO:0008509 monoatomic anion transmembrane transporter activity MF
GO:0008514 organic anion transmembrane transporter activity MF
GO:0009611 response to wounding BP
GO:0009628 response to abiotic stimulus BP
GO:0009651 response to salt stress BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009737 response to abscisic acid BP
GO:0009790 embryo development BP
GO:0009791 post-embryonic development BP
GO:0009793 embryo development ending in seed dormancy BP
GO:0009897 external side of plasma membrane CC
GO:0009965 leaf morphogenesis BP
GO:0009986 cell surface CC
GO:0010016 shoot system morphogenesis BP
GO:0010033 response to organic substance BP
GO:0010051 xylem and phloem pattern formation BP
GO:0010154 fruit development BP
GO:0010222 stem vascular tissue pattern formation BP
GO:0010588 cotyledon vascular tissue pattern formation BP
GO:0010876 lipid localization BP
GO:0015075 monoatomic ion transmembrane transporter activity MF
GO:0015245 fatty acid transmembrane transporter activity MF
GO:0015318 inorganic molecular entity transmembrane transporter activity MF
GO:0015399 primary active transmembrane transporter activity MF
GO:0015405 ATPase-coupled transmembrane transporter activity MF
GO:0015711 organic anion transport BP
GO:0015718 monocarboxylic acid transport BP
GO:0015849 organic acid transport BP
GO:0015908 fatty acid transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0022414 reproductive process BP
GO:0022804 active transmembrane transporter activity MF
GO:0022857 transmembrane transporter activity MF
GO:0031224 obsolete intrinsic component of membrane CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0033036 macromolecule localization BP
GO:0033993 response to lipid BP
GO:0034220 monoatomic ion transmembrane transport BP
GO:0042221 response to chemical BP
GO:0042623 ATP hydrolysis activity MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0043492 ATPase-coupled transmembrane transporter activity MF
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0046942 carboxylic acid transport BP
GO:0046943 carboxylic acid transmembrane transporter activity MF
GO:0046983 protein dimerization activity MF
GO:0048316 seed development BP
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048598 embryonic morphogenesis BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048825 cotyledon development BP
GO:0048826 cotyledon morphogenesis BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0055085 transmembrane transport BP
GO:0061458 reproductive system development BP
GO:0071702 organic substance transport BP
GO:0071944 cell periphery CC
GO:0080051 cutin transport BP
GO:0090698 post-embryonic plant morphogenesis BP
GO:0097305 response to alcohol BP
GO:0098552 side of membrane CC
GO:0098656 monoatomic anion transmembrane transport BP
GO:0099402 plant organ development BP
GO:1901700 response to oxygen-containing compound BP
GO:1903825 organic acid transmembrane transport BP
GO:1905039 carboxylic acid transmembrane transport BP
GO:1905392 plant organ morphogenesis BP
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003727 single-stranded RNA binding MF
GO:0005622 intracellular anatomical structure CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0008143 poly(A) binding MF
GO:0016604 nuclear body CC
GO:0016607 nuclear speck CC
GO:0031090 organelle membrane CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043621 protein self-association MF
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0070013 intracellular organelle lumen CC
GO:0070717 poly-purine tract binding MF
GO:0097159 organic cyclic compound binding MF
GO:0098588 bounding membrane of organelle CC
GO:0098805 membrane CC
GO:1901363 heterocyclic compound binding MF
KEGG Term Name Description
map03015 mRNA surveillance pathway The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.