Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potra2n8c17524
View in Genome Browser
Position
chr8:6028907-6036035 (-)
7128bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the mitochondrial carrier (TC 2.A.29) family
Belongs to the small GTPase superfamily. Arf family
Organism
Populus tremula
Also AS Potri.008G100000Potri.008G100100AT1G10630AT5G15640Potri.008G100000.v4.1Potri.008G100100.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n9c19887 Rab subfamily of small GTPases
Potra2n9c19560 Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Potra2n9c18639 Brefeldin A-inhibited guanine nucleotide-exchange protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000166 nucleotide binding MF
GO:0001882 nucleoside binding MF
GO:0001883 purine nucleoside binding MF
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005525 GTP binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005769 early endosome CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0006810 transport BP
GO:0008047 enzyme activator activity MF
GO:0008150 biological_process BP
GO:0010033 response to organic substance BP
GO:0010817 regulation of hormone levels BP
GO:0012505 endomembrane system CC
GO:0014070 response to organic cyclic compound BP
GO:0016004 phospholipase activator activity MF
GO:0016192 vesicle-mediated transport BP
GO:0017076 purine nucleotide binding MF
GO:0019001 guanyl nucleotide binding MF
GO:0019222 regulation of metabolic process BP
GO:0030234 enzyme regulator activity MF
GO:0031001 response to brefeldin A BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032350 regulation of hormone metabolic process BP
GO:0032549 ribonucleoside binding MF
GO:0032550 purine ribonucleoside binding MF
GO:0032553 ribonucleotide binding MF
GO:0032555 purine ribonucleotide binding MF
GO:0032561 guanyl ribonucleotide binding MF
GO:0035639 purine ribonucleoside triphosphate binding MF
GO:0036094 small molecule binding MF
GO:0042221 response to chemical BP
GO:0043085 positive regulation of catalytic activity BP
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044093 positive regulation of molecular function BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046677 response to antibiotic BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0060229 lipase activator activity MF
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0090354 regulation of auxin metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:0097708 intracellular vesicle CC
GO:0098772 molecular function regulator activity MF
GO:0098791 Golgi apparatus subcompartment CC
GO:0098876 vesicle-mediated transport to the plasma membrane BP
GO:1901265 nucleoside phosphate binding MF
GO:1901363 heterocyclic compound binding MF
GO:1901700 response to oxygen-containing compound BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.