Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potra2n969s36912
View in Genome Browser
Position
scaffold969:3187-4508 (-)
1321bp
Gene Type
gene
Gene Description (Protein Product)
Rab subfamily of small GTPases
Organism
Populus tremula
Also AS Potri.018G079300AT4G19640Potri.018G079300.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n9c19560 Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Potra2n9c19110 Ras-related protein
Potra2n9c19887 Rab subfamily of small GTPases

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000166 nucleotide binding MF
GO:0000322 storage vacuole CC
GO:0000323 lytic vacuole CC
GO:0000324 fungal-type vacuole CC
GO:0000329 fungal-type vacuole membrane CC
GO:0001882 nucleoside binding MF
GO:0001883 purine nucleoside binding MF
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003924 GTPase activity MF
GO:0005488 binding MF
GO:0005525 GTP binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005769 early endosome CC
GO:0005770 late endosome CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0006605 protein targeting BP
GO:0006623 protein targeting to vacuole BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006892 post-Golgi vesicle-mediated transport BP
GO:0006895 Golgi to endosome transport BP
GO:0006897 endocytosis BP
GO:0006906 vesicle fusion BP
GO:0006996 organelle organization BP
GO:0007032 endosome organization BP
GO:0007034 vacuolar transport BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007264 small GTPase mediated signal transduction BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0009987 cellular process BP
GO:0010008 endosome membrane CC
GO:0010256 endomembrane system organization BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016050 vesicle organization BP
GO:0016192 vesicle-mediated transport BP
GO:0016197 endosomal transport BP
GO:0016462 pyrophosphatase activity MF
GO:0016482 cytosolic transport BP
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0017076 purine nucleotide binding MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019001 guanyl nucleotide binding MF
GO:0022607 cellular component assembly BP
GO:0023052 signaling BP
GO:0031090 organelle membrane CC
GO:0031410 cytoplasmic vesicle CC
GO:0031901 early endosome membrane CC
GO:0031982 vesicle CC
GO:0032386 regulation of intracellular transport BP
GO:0032509 endosome transport via multivesicular body sorting pathway BP
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway BP
GO:0032549 ribonucleoside binding MF
GO:0032550 purine ribonucleoside binding MF
GO:0032553 ribonucleotide binding MF
GO:0032555 purine ribonucleotide binding MF
GO:0032561 guanyl ribonucleotide binding MF
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0033036 macromolecule localization BP
GO:0033157 regulation of intracellular protein transport BP
GO:0033365 protein localization to organelle BP
GO:0034058 endosomal vesicle fusion BP
GO:0034613 protein localization BP
GO:0035556 intracellular signal transduction BP
GO:0035639 purine ribonucleoside triphosphate binding MF
GO:0036010 protein localization to endosome BP
GO:0036094 small molecule binding MF
GO:0036257 multivesicular body organization BP
GO:0036258 multivesicular body assembly BP
GO:0042886 amide transport BP
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044085 cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044437 obsolete vacuolar part CC
GO:0044440 obsolete endosomal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0045324 late endosome to vacuole transport BP
GO:0046907 intracellular transport BP
GO:0048193 Golgi vesicle transport BP
GO:0048284 organelle fusion BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051049 regulation of transport BP
GO:0051179 localization BP
GO:0051223 regulation of protein transport BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051716 cellular response to stimulus BP
GO:0060341 regulation of cellular localization BP
GO:0061024 membrane organization BP
GO:0061025 membrane fusion BP
GO:0065007 biological regulation BP
GO:0070201 regulation of establishment of protein localization BP
GO:0070727 cellular macromolecule localization BP
GO:0070925 organelle assembly BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071985 multivesicular body sorting pathway BP
GO:0072594 establishment of protein localization to organelle BP
GO:0072665 protein localization to vacuole BP
GO:0072666 establishment of protein localization to vacuole BP
GO:0090087 regulation of peptide transport BP
GO:0090174 organelle membrane fusion BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098657 import into cell BP
GO:0098805 membrane CC
GO:0098852 lytic vacuole membrane CC
GO:1901265 nucleoside phosphate binding MF
GO:1901363 heterocyclic compound binding MF
GO:1903827 regulation of protein localization BP
KEGG Term Name Description
map04145 Phagosome Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.