Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potra2n9c19273
View in Genome Browser
Position
chr9:4480925-4482700 (-)
1775bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the small GTPase superfamily. Arf family
GTP binding
Organism
Populus tremula
Also AS Potri.009G096900AT3G62290AT1G10630AT2G15310Potri.009G096900.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n9c19887 Rab subfamily of small GTPases
Potra2n9c19560 Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Potra2n9c19944 Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2 ). Among the enzymes to be stimulated by the calmodulin-Ca(2 ) complex are a number of protein kinases and phosphatases

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005794 Golgi apparatus CC
GO:0012505 endomembrane system CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0000166 nucleotide binding MF
GO:0000278 mitotic cell cycle BP
GO:0000281 mitotic cytokinesis BP
GO:0000910 cytokinesis BP
GO:0001882 nucleoside binding MF
GO:0001883 purine nucleoside binding MF
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005525 GTP binding MF
GO:0006464 protein modification process BP
GO:0006471 obsolete protein ADP-ribosylation BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0007049 cell cycle BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009987 cellular process BP
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016192 vesicle-mediated transport BP
GO:0017076 purine nucleotide binding MF
GO:0019001 guanyl nucleotide binding MF
GO:0019538 protein metabolic process BP
GO:0022402 cell cycle process BP
GO:0031344 regulation of cell projection organization BP
GO:0032549 ribonucleoside binding MF
GO:0032550 purine ribonucleoside binding MF
GO:0032553 ribonucleotide binding MF
GO:0032555 purine ribonucleotide binding MF
GO:0032561 guanyl ribonucleotide binding MF
GO:0033036 macromolecule localization BP
GO:0034613 protein localization BP
GO:0035639 purine ribonucleoside triphosphate binding MF
GO:0036094 small molecule binding MF
GO:0036211 protein modification process BP
GO:0042886 amide transport BP
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0045184 establishment of protein localization BP
GO:0046907 intracellular transport BP
GO:0048471 perinuclear region of cytoplasm CC
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051128 regulation of cellular component organization BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051301 cell division BP
GO:0051489 regulation of filopodium assembly BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0060491 regulation of cell projection assembly BP
GO:0061640 cytoskeleton-dependent cytokinesis BP
GO:0065007 biological regulation BP
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071705 nitrogen compound transport BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:0120032 regulation of plasma membrane bounded cell projection assembly BP
GO:0120035 regulation of plasma membrane bounded cell projection organization BP
GO:1901265 nucleoside phosphate binding MF
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1903047 mitotic cell cycle process BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.