PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Potrx035673g00010 View in Genome Browser
Position	Potrx035673:414-6386 (+) 5972bp
Gene Type	gene
Gene Description (Protein Product)	-
Organism	Populus tremula x Populus tremuloides
Also AS	Potri.001G336400AT3G01720Potri.001G336400.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Potrx046815g00010 UDP-D-xylose L-fucose alpha-1,3-D-xylosyltransferase 2-like Potrx059773g00040 UDP-D-xylose L-fucose alpha-1,3-D-xylosyltransferase Potrx060256g00030 UDP-D-xylose L-fucose alpha-1,3-D-xylosyltransferase 2-like
Regulatory gene	Potrx000259g00020 B3 domain-containing transcription factor Potrx000341g00010 NAC domain-containing protein Potrx000403g00010 NAC domain protein, IPR003441 source

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map00514	Other types of O-glycan biosynthesis	O-mannosyl glycans are a type of O-glycans that are found both in eukaryotes and prokaryotes. Biosynthesis of O-mannosyl glycans is initiated by the transfer of mannose from Man-P-Dol to serine or threonine residue, which is catalyzed by protein O-mannosyltransferases POMT1 and POMT2. Defects of these genes are linked to human diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].