Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Potrx040847g00020
View in Genome Browser
Position
Potrx040847:6947-9141 (-)
2194bp
Gene Type
gene
Gene Description (Protein Product)
Phytoene synthase
Organism
Populus tremula x Populus tremuloides
Also AS Potri.001G007700AT5G17230Potri.001G007700.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrx062877g00010 Phytoene synthase
Potrx050705g00010 Dehydrodolichyl diphosphate syntase complex subunit
Potrx061692g00020 Belongs to the FPP GGPP synthase family
Regulatory gene
Potrx000259g00020 B3 domain-containing transcription factor
Potrx000718g00010 B3 DNA binding domain
Potrx000925g00010 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00906 Carotenoid biosynthesis -