PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Potrx053745g00010 View in Genome Browser
Position	Potrx053745:6480-6759 (-) 279bp
Gene Type	gene
Gene Description (Protein Product)	mitochondrial pyruvate transmembrane transport
Organism	Populus tremula x Populus tremuloides
Also AS	Potri.001G333902AT5G20090Potri.001G333902.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Potrx063002g00020 heme protein Potrx065108g00010 heme protein Potrx216632g00040 Respiratory-chain NADH dehydrogenase, 49 Kd subunit
Regulatory gene	Potrx000106g00010 MADS-box protein Potrx000487g00010 SBP domain Potrx000589g00010 Agamous-like MADS-box protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0005215	transporter activity	MF
GO:0005342	organic acid transmembrane transporter activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005740	mitochondrial envelope	CC
GO:0005743	mitochondrial inner membrane	CC
GO:0006082	organic acid metabolic process	BP
GO:0006084	acetyl-CoA metabolic process	BP
GO:0006085	acetyl-CoA biosynthetic process	BP
GO:0006086	acetyl-CoA biosynthetic process from pyruvate	BP
GO:0006090	pyruvate metabolic process	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006163	purine nucleotide metabolic process	BP
GO:0006164	purine nucleotide biosynthetic process	BP
GO:0006637	acyl-CoA metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006733	obsolete oxidoreduction coenzyme metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006790	sulfur compound metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006811	monoatomic ion transport	BP
GO:0006820	monoatomic anion transport	BP
GO:0006839	mitochondrial transport	BP
GO:0006848	pyruvate transport	BP
GO:0006850	mitochondrial pyruvate transmembrane transport	BP
GO:0008028	monocarboxylic acid transmembrane transporter activity	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008509	monoatomic anion transmembrane transporter activity	MF
GO:0008514	organic anion transmembrane transporter activity	MF
GO:0009058	biosynthetic process	BP
GO:0009108	obsolete coenzyme biosynthetic process	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009150	purine ribonucleotide metabolic process	BP
GO:0009152	purine ribonucleotide biosynthetic process	BP
GO:0009165	nucleotide biosynthetic process	BP
GO:0009259	ribonucleotide metabolic process	BP
GO:0009260	ribonucleotide biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0015075	monoatomic ion transmembrane transporter activity	MF
GO:0015318	inorganic molecular entity transmembrane transporter activity	MF
GO:0015711	organic anion transport	BP
GO:0015718	monocarboxylic acid transport	BP
GO:0015849	organic acid transport	BP
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0018130	heterocycle biosynthetic process	BP
GO:0019362	pyridine nucleotide metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019693	ribose phosphate metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0019866	organelle inner membrane	CC
GO:0022857	transmembrane transporter activity	MF
GO:0031090	organelle membrane	CC
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031300	obsolete intrinsic component of organelle membrane	CC
GO:0031301	obsolete integral component of organelle membrane	CC
GO:0031304	obsolete intrinsic component of mitochondrial inner membrane	CC
GO:0031305	obsolete integral component of mitochondrial inner membrane	CC
GO:0031966	mitochondrial membrane	CC
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0032592	obsolete integral component of mitochondrial membrane	CC
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0033865	nucleoside bisphosphate metabolic process	BP
GO:0033866	nucleoside bisphosphate biosynthetic process	BP
GO:0033875	ribonucleoside bisphosphate metabolic process	BP
GO:0034030	ribonucleoside bisphosphate biosynthetic process	BP
GO:0034032	purine nucleoside bisphosphate metabolic process	BP
GO:0034033	purine nucleoside bisphosphate biosynthetic process	BP
GO:0034097	response to cytokine	BP
GO:0034220	monoatomic ion transmembrane transport	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0035383	thioester metabolic process	BP
GO:0035384	thioester biosynthetic process	BP
GO:0042221	response to chemical	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044272	sulfur compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044429	obsolete mitochondrial part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044455	obsolete mitochondrial membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0046390	ribose phosphate biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046496	nicotinamide nucleotide metabolic process	BP
GO:0046942	carboxylic acid transport	BP
GO:0046943	carboxylic acid transmembrane transporter activity	MF
GO:0050833	pyruvate transmembrane transporter activity	MF
GO:0050896	response to stimulus	BP
GO:0051179	localization	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0051234	establishment of localization	BP
GO:0051716	cellular response to stimulus	BP
GO:0055085	transmembrane transport	BP
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0061732	obsolete mitochondrial acetyl-CoA biosynthetic process from pyruvate	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0071310	cellular response to organic substance	BP
GO:0071345	cellular response to cytokine stimulus	BP
GO:0071616	acyl-CoA biosynthetic process	BP
GO:0071702	organic substance transport	BP
GO:0071704	organic substance metabolic process	BP
GO:0072521	purine-containing compound metabolic process	BP
GO:0072522	purine-containing compound biosynthetic process	BP
GO:0072524	pyridine-containing compound metabolic process	BP
GO:0090407	organophosphate biosynthetic process	BP
GO:0098573	obsolete intrinsic component of mitochondrial membrane	CC
GO:0098656	monoatomic anion transmembrane transport	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901293	nucleoside phosphate biosynthetic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901475	pyruvate transmembrane transport	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1903825	organic acid transmembrane transport	BP
GO:1905039	carboxylic acid transmembrane transport	BP
GO:1990542	mitochondrial transmembrane transport	BP
GO:1990823	response to leukemia inhibitory factor	BP
GO:1990830	cellular response to leukemia inhibitory factor	BP

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.