PPGR - Gene Detail

Gene ID	Potrx058346g00010 View in Genome Browser
Position	Potrx058346:1-11161 (+) 11160bp
Gene Type	gene
Gene Description (Protein Product)	Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Organism	Populus tremula x Populus tremuloides
Also AS	Potri.010G186900AT3G11130Potri.010G186900.v4.1

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)

Potrx061947g00020 ADP-ribosylation factor GTPase-activating protein

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005794	Golgi apparatus	CC
GO:0005829	cytosol	CC
GO:0005886	plasma membrane	CC
GO:0005911	cell-cell junction	CC
GO:0006810	transport	BP
GO:0006897	endocytosis	BP
GO:0006898	receptor-mediated endocytosis	BP
GO:0008150	biological_process	BP
GO:0009506	plasmodesma	CC
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009987	cellular process	BP
GO:0010118	stomatal movement	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016192	vesicle-mediated transport	BP
GO:0030054	cell junction	CC
GO:0031090	organelle membrane	CC
GO:0042802	identical protein binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0055044	symplast	CC
GO:0071944	cell periphery	CC
GO:0072583	clathrin-dependent endocytosis	BP
GO:0098588	bounding membrane of organelle	CC
GO:0098657	import into cell	BP
GO:0098805	membrane	CC

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.