Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Potrx059086g00040
View in Genome Browser
Position
Potrx059086:16006-19305 (+)
3299bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the WD repeat SEC13 family
Organism
Populus tremula x Populus tremuloides
Also AS Potri.003G138300AT1G64350Potri.003G138300.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrx061602g00070 Nuclear pore complex protein
Potrx061687g00030 Nuclear pore protein
Potrx062794g00020 Nuclear pore complex protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000070 mitotic sister chromatid segregation BP
GO:0000278 mitotic cell cycle BP
GO:0000280 nuclear division BP
GO:0000323 lytic vacuole CC
GO:0000819 sister chromatid segregation BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005635 nuclear envelope CC
GO:0005643 nuclear pore CC
GO:0005737 cytoplasm CC
GO:0005764 lysosome CC
GO:0005765 lysosomal membrane CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0006996 organelle organization BP
GO:0006997 nucleus organization BP
GO:0006999 nuclear pore organization BP
GO:0007049 cell cycle BP
GO:0007059 chromosome segregation BP
GO:0007080 mitotic metaphase plate congression BP
GO:0008150 biological_process BP
GO:0008608 attachment of spindle microtubules to kinetochore BP
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0022402 cell cycle process BP
GO:0031080 nuclear pore outer ring CC
GO:0031090 organelle membrane CC
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043933 protein-containing complex organization BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0048285 organelle fission BP
GO:0050000 chromosome localization BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051276 chromosome organization BP
GO:0051303 establishment of chromosome localization BP
GO:0051310 metaphase plate congression BP
GO:0051315 attachment of mitotic spindle microtubules to kinetochore BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051656 establishment of organelle localization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0098588 bounding membrane of organelle CC
GO:0098805 membrane CC
GO:0098813 nuclear chromosome segregation BP
GO:0098852 lytic vacuole membrane CC
GO:0140014 mitotic nuclear division BP
GO:1903047 mitotic cell cycle process BP
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.