PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Potrx062573g00040 View in Genome Browser
Position	Potrx062573:15338-16015 (-) 677bp
Gene Type	gene
Gene Description (Protein Product)	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Organism	Populus tremula x Populus tremuloides
Also AS	Potri.006G005500AT4G14540Potri.006G005500.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Potrx064072g00030 Nuclear transcription factor Y subunit Potrx062915g00010 Nuclear transcription factor Y subunit Potrx064256g00010 Belongs to the GRAS family
Target gene	Potrx002002g00010 Growth-regulating factor Potrx002601g00010 Belongs to the GRAS family Potrx005177g00020 cytochrome c oxidase assembly protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000976	transcription cis-regulatory region binding	MF
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	MF
GO:0001067	transcription regulatory region nucleic acid binding	MF
GO:0001654	eye development	BP
GO:0001932	regulation of protein phosphorylation	BP
GO:0001934	positive regulation of protein phosphorylation	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003690	double-stranded DNA binding	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005667	transcription regulator complex	CC
GO:0005737	cytoplasm	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006351	DNA-templated transcription	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006357	regulation of transcription by RNA polymerase II	BP
GO:0006366	transcription by RNA polymerase II	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007275	multicellular organism development	BP
GO:0007399	nervous system development	BP
GO:0007423	sensory organ development	BP
GO:0008134	transcription factor binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009966	regulation of signal transduction	BP
GO:0009967	positive regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010562	positive regulation of phosphorus metabolic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0010646	regulation of cell communication	BP
GO:0010647	positive regulation of cell communication	BP
GO:0010720	positive regulation of cell development	BP
GO:0010941	regulation of cell death	BP
GO:0016070	RNA metabolic process	BP
GO:0016602	CCAAT-binding factor complex	CC
GO:0018130	heterocycle biosynthetic process	BP
GO:0019216	regulation of lipid metabolic process	BP
GO:0019218	regulation of steroid metabolic process	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019220	regulation of phosphate metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0022008	neurogenesis	BP
GO:0022603	regulation of anatomical structure morphogenesis	BP
GO:0023051	regulation of signaling	BP
GO:0023056	positive regulation of signaling	BP
GO:0030154	cell differentiation	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031399	regulation of protein modification process	BP
GO:0031401	positive regulation of protein modification process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032268	regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032774	RNA biosynthetic process	BP
GO:0032991	protein-containing complex	CC
GO:0032993	protein-DNA complex	CC
GO:0034097	response to cytokine	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0042221	response to chemical	BP
GO:0042325	regulation of phosphorylation	BP
GO:0042327	positive regulation of phosphorylation	BP
GO:0042981	regulation of apoptotic process	BP
GO:0043066	negative regulation of apoptotic process	BP
GO:0043067	regulation of programmed cell death	BP
GO:0043069	negative regulation of programmed cell death	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043408	regulation of MAPK cascade	BP
GO:0043410	positive regulation of MAPK cascade	BP
GO:0043565	sequence-specific DNA binding	MF
GO:0044212	transcription cis-regulatory region binding	MF
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044798	transcription regulator complex	CC
GO:0044877	protein-containing complex binding	MF
GO:0045540	regulation of cholesterol biosynthetic process	BP
GO:0045595	regulation of cell differentiation	BP
GO:0045597	positive regulation of cell differentiation	BP
GO:0045664	regulation of neuron differentiation	BP
GO:0045666	positive regulation of neuron differentiation	BP
GO:0045676	regulation of R7 cell differentiation	BP
GO:0045678	positive regulation of R7 cell differentiation	BP
GO:0045893	positive regulation of DNA-templated transcription	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0045937	positive regulation of phosphate metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046532	regulation of photoreceptor cell differentiation	BP
GO:0046534	positive regulation of photoreceptor cell differentiation	BP
GO:0046890	regulation of lipid biosynthetic process	BP
GO:0048513	animal organ development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0048699	generation of neurons	BP
GO:0048731	system development	BP
GO:0048749	compound eye development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050767	regulation of neurogenesis	BP
GO:0050769	positive regulation of neurogenesis	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050810	regulation of steroid biosynthetic process	BP
GO:0050896	response to stimulus	BP
GO:0051094	positive regulation of developmental process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051174	regulation of phosphorus metabolic process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051240	positive regulation of multicellular organismal process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051716	cellular response to stimulus	BP
GO:0051960	regulation of nervous system development	BP
GO:0051962	positive regulation of nervous system development	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060284	regulation of cell development	BP
GO:0060548	negative regulation of cell death	BP
GO:0062012	regulation of small molecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070491	DNA-binding transcription factor binding	MF
GO:0070887	cellular response to chemical stimulus	BP
GO:0071310	cellular response to organic substance	BP
GO:0071345	cellular response to cytokine stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090181	regulation of cholesterol metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090575	RNA polymerase II transcription regulator complex	CC
GO:0097159	organic cyclic compound binding	MF
GO:0097659	nucleic acid-templated transcription	BP
GO:0106118	regulation of sterol biosynthetic process	BP
GO:0140110	transcription regulator activity	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901576	organic substance biosynthetic process	BP
GO:1902531	regulation of intracellular signal transduction	BP
GO:1902533	positive regulation of intracellular signal transduction	BP
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1902930	regulation of alcohol biosynthetic process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1990823	response to leukemia inhibitory factor	BP
GO:1990830	cellular response to leukemia inhibitory factor	BP
GO:1990837	sequence-specific double-stranded DNA binding	MF
GO:2000026	regulation of multicellular organismal development	BP
GO:2000027	regulation of animal organ morphogenesis	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP