PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Potrx063748g00010 View in Genome Browser
Position	Potrx063748:384-22053 (-) 21669bp
Gene Type	gene
Gene Description (Protein Product)	Chromatin structure-remodeling complex protein
Organism	Populus tremula x Populus tremuloides
Also AS	Potri.008G195900AT2G28290Potri.008G195900.v4.1

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Potrx066254g00020 FACT complex subunit

Potrx066254g00030 FACT complex subunit

Potrx064824g00040 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000166	nucleotide binding	MF
GO:0000228	nuclear chromosome	CC
GO:0000785	chromatin	CC
GO:0000790	chromatin	CC
GO:0000988	obsolete transcription factor activity, protein binding	MF
GO:0000990	obsolete transcription factor activity, core RNA polymerase binding	MF
GO:0000991	obsolete transcription factor activity, core RNA polymerase II binding	MF
GO:0002831	regulation of response to biotic stimulus	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003678	DNA helicase activity	MF
GO:0003824	catalytic activity	MF
GO:0004003	DNA helicase activity	MF
GO:0004386	helicase activity	MF
GO:0005488	binding	MF
GO:0005524	ATP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005694	chromosome	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006325	chromatin organization	BP
GO:0006338	chromatin remodeling	BP
GO:0006351	DNA-templated transcription	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006357	regulation of transcription by RNA polymerase II	BP
GO:0006366	transcription by RNA polymerase II	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006996	organelle organization	BP
GO:0007275	multicellular organism development	BP
GO:0008026	helicase activity	MF
GO:0008094	ATP-dependent activity, acting on DNA	MF
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009611	response to wounding	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009791	post-embryonic development	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009908	flower development	BP
GO:0009966	regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010104	regulation of ethylene-activated signaling pathway	BP
GO:0010199	organ boundary specification between lateral organs and the meristem	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010646	regulation of cell communication	BP
GO:0010959	regulation of metal ion transport	BP
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016514	SWI/SNF complex	CC
GO:0016586	RSC-type complex	CC
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017076	purine nucleotide binding	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0022414	reproductive process	BP
GO:0023051	regulation of signaling	BP
GO:0030554	adenyl nucleotide binding	MF
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031347	regulation of defense response	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032101	regulation of response to external stimulus	BP
GO:0032392	DNA geometric change	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032508	DNA duplex unwinding	BP
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032559	adenyl ribonucleotide binding	MF
GO:0032774	RNA biosynthetic process	BP
GO:0032879	regulation of localization	BP
GO:0032991	protein-containing complex	CC
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0034756	regulation of iron ion transport	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0040029	epigenetic regulation of gene expression	BP
GO:0042623	ATP hydrolysis activity	MF
GO:0043044	chromatin remodeling	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043269	regulation of monoatomic ion transport	BP
GO:0043900	obsolete regulation of multi-organism process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044427	obsolete chromosomal part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044454	obsolete nuclear chromosome part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0048367	shoot system development	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048608	reproductive structure development	BP
GO:0048646	anatomical structure formation involved in morphogenesis	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0048859	formation of anatomical boundary	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051049	regulation of transport	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061458	reproductive system development	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070035	obsolete purine NTP-dependent helicase activity	MF
GO:0070297	regulation of phosphorelay signal transduction system	BP
GO:0070603	SWI/SNF superfamily-type complex	CC
GO:0071103	DNA conformation change	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0080134	regulation of response to stress	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090567	reproductive shoot system development	BP
GO:0090691	formation of plant organ boundary	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:0097659	nucleic acid-templated transcription	BP
GO:0140097	catalytic activity, acting on DNA	MF
GO:0140110	transcription regulator activity	MF
GO:1900150	regulation of defense response to fungus	BP
GO:1900390	regulation of iron ion transport	BP
GO:1900393	obsolete regulation of iron ion import into cell by regulation of transcription from RNA polymerase II promoter	BP
GO:1900400	obsolete regulation of iron ion import into cell by regulation of transcription from RNA polymerase II promoter	BP
GO:1901265	nucleoside phosphate binding	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901576	organic substance biosynthetic process	BP
GO:1902494	catalytic complex	CC
GO:1902531	regulation of intracellular signal transduction	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1904949	ATPase complex	CC
GO:2000022	regulation of jasmonic acid mediated signaling pathway	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP