Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Potrx064263g00010
View in Genome Browser
Position
Potrx064263:2932-3777 (-)
845bp
Gene Type
gene
Gene Description (Protein Product)
LOB domain-containing protein
Organism
Populus tremula x Populus tremuloides
Also AS Potri.002G041100AT3G58190Potri.002G041100.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrx065174g00010 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Potrx066330g00020 Protein PROTON GRADIENT REGULATION 5
Potrx065140g00010 Carrier of the growing fatty acid chain in fatty acid biosynthesis
Target gene
Potrx000326g00020 transcription factor
Potrx000416g00030 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Potrx000460g00010 Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009791 post-embryonic development BP
GO:0010015 root morphogenesis BP
GO:0010101 post-embryonic root morphogenesis BP
GO:0010102 lateral root morphogenesis BP
GO:0010311 lateral root formation BP
GO:0022622 root system development BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0046983 protein dimerization activity MF
GO:0048364 root development BP
GO:0048527 lateral root development BP
GO:0048528 post-embryonic root development BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048731 system development BP
GO:0048830 adventitious root development BP
GO:0048856 anatomical structure development BP
GO:0090696 post-embryonic plant organ development BP
GO:0090697 post-embryonic plant organ morphogenesis BP
GO:0090698 post-embryonic plant morphogenesis BP
GO:0099402 plant organ development BP
GO:1905392 plant organ morphogenesis BP
GO:1905393 plant organ formation BP