PPGR - Gene Detail

Basic Information

Gene ID	Potrx065710g00020 View in Genome Browser
Position	Potrx065710:9052-12733 (-) 3681bp
Gene Type	gene
Gene Description (Protein Product)	Polygalacturonase
Organism	Populus tremula x Populus tremuloides
Also AS	Potri.009G060400AT3G07970Potri.009G060400.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Potrx066103g00020 Pectate lyase superfamily protein

Potrx214673g00010 Exopolygalacturonase-like

Potrx213699g00010 Acts in the modification of cell walls via demethylesterification of cell wall pectin

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000272	polysaccharide catabolic process	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	MF
GO:0004650	polygalacturonase activity	MF
GO:0005975	carbohydrate metabolic process	BP
GO:0005976	polysaccharide metabolic process	BP
GO:0007275	multicellular organism development	BP
GO:0007276	gamete generation	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009555	pollen development	BP
GO:0009664	plant-type cell wall organization	BP
GO:0009791	post-embryonic development	BP
GO:0009827	plant-type cell wall modification	BP
GO:0009830	cell wall modification involved in abscission	BP
GO:0009838	abscission	BP
GO:0009900	dehiscence	BP
GO:0009901	anther dehiscence	BP
GO:0009908	flower development	BP
GO:0009987	cellular process	BP
GO:0010047	fruit dehiscence	BP
GO:0010393	galacturonan metabolic process	BP
GO:0016043	cellular component organization	BP
GO:0016052	carbohydrate catabolic process	BP
GO:0016787	hydrolase activity	MF
GO:0016798	hydrolase activity, acting on glycosyl bonds	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0019953	sexual reproduction	BP
GO:0022411	cellular component disassembly	BP
GO:0022412	cellular process involved in reproduction in multicellular organism	BP
GO:0022414	reproductive process	BP
GO:0030154	cell differentiation	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0042545	cell wall modification	BP
GO:0042737	xenobiotic catabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044277	cell wall disassembly	BP
GO:0044703	multi-organism reproductive process	BP
GO:0045229	external encapsulating structure organization	BP
GO:0045488	pectin metabolic process	BP
GO:0045490	pectin catabolic process	BP
GO:0048229	gametophyte development	BP
GO:0048232	male gamete generation	BP
GO:0048235	pollen sperm cell differentiation	BP
GO:0048367	shoot system development	BP
GO:0048437	floral organ development	BP
GO:0048438	floral whorl development	BP
GO:0048443	stamen development	BP
GO:0048466	androecium development	BP
GO:0048608	reproductive structure development	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048653	anther development	BP
GO:0048731	system development	BP
GO:0048827	phyllome development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0055046	microgametogenesis	BP
GO:0061458	reproductive system development	BP
GO:0071554	cell wall organization or biogenesis	BP
GO:0071555	cell wall organization	BP
GO:0071669	plant-type cell wall organization or biogenesis	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090567	reproductive shoot system development	BP
GO:0099402	plant organ development	BP
GO:1901575	organic substance catabolic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map01100	Metabolic pathways	-
map00040	Pentose and glucuronate interconversions	-
map00040	Pentose and glucuronate interconversions	-