Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Potrx065913g00020
View in Genome Browser
Position
Potrx065913:6239-6557 (+)
318bp
Gene Type
gene
Gene Description (Protein Product)
oxidation-reduction process
Organism
Populus tremula x Populus tremuloides
Also AS Potri.011G022500AT4G05530Potri.011G022500.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrx216853g00010 Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes
Potrx214336g00010 Sarcosine oxidase
Potrx065984g00010 enoyl-CoA hydratase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000253 3-keto sterol reductase activity MF
GO:0001523 retinoid metabolic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004033 aldo-keto reductase (NADP) activity MF
GO:0004090 carbonyl reductase (NADPH) activity MF
GO:0005102 signaling receptor binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005777 peroxisome CC
GO:0005782 peroxisomal matrix CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0005829 cytosol CC
GO:0006066 alcohol metabolic process BP
GO:0006605 protein targeting BP
GO:0006625 protein targeting to peroxisome BP
GO:0006629 lipid metabolic process BP
GO:0006720 isoprenoid metabolic process BP
GO:0006721 terpenoid metabolic process BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006996 organelle organization BP
GO:0007031 peroxisome organization BP
GO:0008104 protein localization BP
GO:0008106 alcohol dehydrogenase (NADP+) activity MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008202 steroid metabolic process BP
GO:0009987 cellular process BP
GO:0010817 regulation of hormone levels BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016101 diterpenoid metabolic process BP
GO:0016491 oxidoreductase activity MF
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor MF
GO:0016651 oxidoreductase activity, acting on NAD(P)H MF
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor MF
GO:0018455 alcohol dehydrogenase [NAD(P)+] activity MF
GO:0022607 cellular component assembly BP
GO:0031907 microbody lumen CC
GO:0031974 membrane-enclosed lumen CC
GO:0031984 organelle subcompartment CC
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0034308 primary alcohol metabolic process BP
GO:0034613 protein localization BP
GO:0034754 hormone metabolic process BP
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0042180 cellular ketone metabolic process BP
GO:0042445 hormone metabolic process BP
GO:0042572 retinol metabolic process BP
GO:0042579 microbody CC
GO:0042886 amide transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043574 peroxisomal transport BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044438 obsolete microbody part CC
GO:0044439 obsolete peroxisomal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0046907 intracellular transport BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051259 protein complex oligomerization BP
GO:0051262 protein tetramerization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0052650 NADP-retinol dehydrogenase activity MF
GO:0055114 obsolete oxidation-reduction process BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070013 intracellular organelle lumen CC
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072594 establishment of protein localization to organelle BP
GO:0072662 protein localization to peroxisome BP
GO:0072663 establishment of protein localization to peroxisome BP
GO:0098827 endoplasmic reticulum subcompartment CC
GO:1901360 organic cyclic compound metabolic process BP
GO:1901615 organic hydroxy compound metabolic process BP
KEGG Term Name Description
map04146 Peroxisome Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
map01100 Metabolic pathways -