Basic Information
Gene ID
Potrx066184g00010
Position
Potrx066184:1693-5792 (-)
4099bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 1 helix-hairpin domain
Organism
Also AS Potri.003G107200AT5G51300Potri.003G107200.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrx066212g00010 pre-mRNA-processing factor
Potrx066202g00010 Splicing factor U2af small subunit
Potrx066550g00010 Transcription initiation factor TFIID subunit

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0001101 response to acid chemical BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008380 RNA splicing BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009737 response to abscisic acid BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010467 gene expression BP
GO:0016070 RNA metabolic process BP
GO:0033993 response to lipid BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042221 response to chemical BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0050896 response to stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0097305 response to alcohol BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901700 response to oxygen-containing compound BP