PPGR - Gene Detail

Basic Information

Gene ID	Potrx066266g00020 View in Genome Browser
Position	Potrx066266:3152-14032 (-) 10880bp
Gene Type	gene
Gene Description (Protein Product)	Magnesium-chelatase subunit ChlH Exosome complex
Organism	Populus tremula x Populus tremuloides
Also AS	Potri.006G051200Potri.006G051100AT1G60080AT5G13630Potri.006G051200.v4.1Potri.006G051100.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Potrx066336g00020 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Potrx215919g00170 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

Potrx066277g00010 Prolycopene isomerase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0009507	chloroplast	CC
GO:0009526	plastid envelope	CC
GO:0009528	plastid inner membrane	CC
GO:0009532	plastid stroma	CC
GO:0009536	plastid	CC
GO:0009570	chloroplast stroma	CC
GO:0009706	chloroplast inner membrane	CC
GO:0009941	chloroplast envelope	CC
GO:0010007	magnesium chelatase complex	CC
GO:0016020	membrane	CC
GO:0016851	magnesium chelatase activity	MF
GO:0016874	ligase activity	MF
GO:0019866	organelle inner membrane	CC
GO:0031090	organelle membrane	CC
GO:0031967	organelle envelope	CC
GO:0031969	chloroplast membrane	CC
GO:0031975	envelope	CC
GO:0032991	protein-containing complex	CC
GO:0042170	plastid membrane	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0051002	ligase activity, forming nitrogen-metal bonds	MF
GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	MF
GO:1902494	catalytic complex	CC

KEGG Term	Name	Description
map03018	RNA degradation	The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00860	Porphyrin and chlorophyll metabolism	-