PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	Potrs001573g02701 View in Genome Browser
Position	Potrs001573:14461-18686 (+) 4225bp
Gene Type	gene
Gene Description (Protein Product)	cysteine--tRNA ligase
Organism	Populus tremuloides
Also AS	Potri.010G122500AT5G38830Potri.010G122500.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Potrs008974g13662 cysteine--tRNA Potrs007676g10580 Belongs to the class-I aminoacyl-tRNA synthetase family Potrs004693g06816 Belongs to the class-I aminoacyl-tRNA synthetase family
Regulatory gene	Potrs000389g00482 Dof domain, zinc finger Potrs000805g01297 Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters Potrs000883g01405 dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004812	aminoacyl-tRNA ligase activity	MF
GO:0004817	cysteine-tRNA ligase activity	MF
GO:0005488	binding	MF
GO:0005524	ATP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006082	organic acid metabolic process	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006399	tRNA metabolic process	BP
GO:0006412	translation	BP
GO:0006418	tRNA aminoacylation for protein translation	BP
GO:0006423	cysteinyl-tRNA aminoacylation	BP
GO:0006518	peptide metabolic process	BP
GO:0006520	amino acid metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010035	response to inorganic substance	BP
GO:0010038	response to metal ion	BP
GO:0010467	gene expression	BP
GO:0016070	RNA metabolic process	BP
GO:0016874	ligase activity	MF
GO:0016875	ligase activity, forming carbon-oxygen bonds	MF
GO:0017076	purine nucleotide binding	MF
GO:0019538	protein metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0030554	adenyl nucleotide binding	MF
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032559	adenyl ribonucleotide binding	MF
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0042221	response to chemical	BP
GO:0043038	amino acid activation	BP
GO:0043039	tRNA aminoacylation	BP
GO:0043043	peptide biosynthetic process	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043436	oxoacid metabolic process	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0046686	response to cadmium ion	BP
GO:0050896	response to stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:0140098	catalytic activity, acting on RNA	MF
GO:0140101	catalytic activity, acting on a tRNA	MF
GO:1901265	nucleoside phosphate binding	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map00970	Aminoacyl-tRNA biosynthesis	-