Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potrs002998g04681
View in Genome Browser
Position
Potrs002998:6007-10492 (+)
4485bp
Gene Type
gene
Gene Description (Protein Product)
3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'
Organism
Populus tremuloides
Also AS Potri.002G086400AT1G77680Potri.002G086400.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs008688g12720 Exosome complex
Potrs008467g12332 ATP-dependent RNA helicase SUPV3L1
Potrs019858g22444 Exosome complex component
Regulatory gene
Potrs000389g00482 Dof domain, zinc finger
Potrs000883g01405 dof zinc finger protein
Potrs000913g29758 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000070 mitotic sister chromatid segregation BP
GO:0000175 3'-5'-RNA exonuclease activity MF
GO:0000178 exosome (RNase complex) CC
GO:0000278 mitotic cell cycle BP
GO:0000280 nuclear division BP
GO:0000287 magnesium ion binding MF
GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic BP
GO:0000819 sister chromatid segregation BP
GO:0000932 P-body CC
GO:0000956 nuclear-transcribed mRNA catabolic process BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003727 single-stranded RNA binding MF
GO:0003824 catalytic activity MF
GO:0004518 nuclease activity MF
GO:0004527 exonuclease activity MF
GO:0004532 exoribonuclease activity MF
GO:0004540 ribonuclease activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005844 polysome CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006364 rRNA processing BP
GO:0006396 RNA processing BP
GO:0006401 RNA catabolic process BP
GO:0006402 mRNA catabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007059 chromosome segregation BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008187 poly-pyrimidine tract binding MF
GO:0008266 poly(U) RNA binding MF
GO:0008285 negative regulation of cell population proliferation BP
GO:0008408 3'-5' exonuclease activity MF
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010586 miRNA metabolic process BP
GO:0010587 miRNA catabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016072 rRNA metabolic process BP
GO:0016787 hydrolase activity MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters MF
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters MF
GO:0019222 regulation of metabolic process BP
GO:0019439 aromatic compound catabolic process BP
GO:0019827 stem cell population maintenance BP
GO:0022402 cell cycle process BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032991 protein-containing complex CC
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034655 nucleobase-containing compound catabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0034661 ncRNA catabolic process BP
GO:0035770 ribonucleoprotein granule CC
GO:0036464 cytoplasmic ribonucleoprotein granule CC
GO:0042127 regulation of cell population proliferation BP
GO:0042254 ribosome biogenesis BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044270 cellular nitrogen compound catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0046700 heterocycle catabolic process BP
GO:0046872 metal ion binding MF
GO:0048285 organelle fission BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051276 chromosome organization BP
GO:0051304 chromosome separation BP
GO:0051306 mitotic sister chromatid separation BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0090305 nucleic acid phosphodiester bond hydrolysis BP
GO:0090501 RNA phosphodiester bond hydrolysis BP
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic BP
GO:0097159 organic cyclic compound binding MF
GO:0098727 maintenance of cell number BP
GO:0098813 nuclear chromosome segregation BP
GO:0140014 mitotic nuclear division BP
GO:0140098 catalytic activity, acting on RNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901575 organic substance catabolic process BP
GO:1902494 catalytic complex CC
GO:1903047 mitotic cell cycle process BP
GO:1905354 exoribonuclease complex CC
GO:1990074 polyuridylation-dependent mRNA catabolic process BP
GO:1990904 ribonucleoprotein complex CC