Basic Information
Gene ID
Potrs003878g05756
Position
Potrs003878:5020-6949 (-)
1929bp
Gene Type
gene
Gene Description (Protein Product)
RNA recognition motif
Organism
Also AS Potri.002G205025AT1G02840Potri.002G205025.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs005671g08125 U1 small nuclear ribonucleoprotein 70
Potrs011583g28921 Pre-mRNA-splicing factor
Potrs006638g09328 Pre-mRNA-splicing factor
Regulatory gene
Potrs000130g30685 PHD zinc finger
Potrs000241g00339 transcription factor
Potrs000313g34139 Myb-related protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.