Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potrs008604g12612
View in Genome Browser
Position
Potrs008604:3339-10226 (+)
6887bp
Gene Type
gene
Gene Description (Protein Product)
FAD binding domain of DNA photolyase
Organism
Populus tremuloides
Also AS Potri.010G071200AT1G04400Potri.010G071200.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs010531g15665 Protein SUPPRESSOR OF PHYA-105
Potrs013638g17786 Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
Potrs019384g21719 Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
Regulatory gene
Potrs000037g00005 methyltransferase At2g41040, chloroplastic-like
Potrs000108g00058 Protein TRANSPARENT TESTA
Potrs000124g00190 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000166 nucleotide binding MF
GO:0001101 response to acid chemical BP
GO:0002252 immune effector process BP
GO:0002376 immune system process BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005524 ATP binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006325 chromatin organization BP
GO:0006338 chromatin remodeling BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006873 intracellular monoatomic ion homeostasis BP
GO:0006874 intracellular calcium ion homeostasis BP
GO:0006875 obsolete intracellular metal ion homeostasis BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006996 organelle organization BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007275 multicellular organism development BP
GO:0007623 circadian rhythm BP
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009117 nucleotide metabolic process BP
GO:0009314 response to radiation BP
GO:0009414 response to water deprivation BP
GO:0009415 response to water BP
GO:0009416 response to light stimulus BP
GO:0009605 response to external stimulus BP
GO:0009606 tropism BP
GO:0009607 response to biotic stimulus BP
GO:0009615 response to virus BP
GO:0009628 response to abiotic stimulus BP
GO:0009637 response to blue light BP
GO:0009638 phototropism BP
GO:0009642 response to light intensity BP
GO:0009645 response to low light intensity stimulus BP
GO:0009646 response to absence of light BP
GO:0009648 photoperiodism BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009785 blue light signaling pathway BP
GO:0009791 post-embryonic development BP
GO:0009881 photoreceptor activity MF
GO:0009882 blue light photoreceptor activity MF
GO:0009888 tissue development BP
GO:0009893 positive regulation of metabolic process BP
GO:0009909 regulation of flower development BP
GO:0009911 positive regulation of flower development BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010073 meristem maintenance BP
GO:0010075 regulation of meristem growth BP
GO:0010118 stomatal movement BP
GO:0010228 vegetative to reproductive phase transition of meristem BP
GO:0010244 response to low fluence blue light stimulus by blue low-fluence system BP
GO:0010617 circadian regulation of calcium ion oscillation BP
GO:0014070 response to organic cyclic compound BP
GO:0016043 cellular component organization BP
GO:0016604 nuclear body CC
GO:0017076 purine nucleotide binding MF
GO:0019222 regulation of metabolic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019725 cellular homeostasis BP
GO:0022414 reproductive process BP
GO:0022603 regulation of anatomical structure morphogenesis BP
GO:0023052 signaling BP
GO:0030003 intracellular monoatomic cation homeostasis BP
GO:0030522 intracellular receptor signaling pathway BP
GO:0030554 adenyl nucleotide binding MF
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032553 ribonucleotide binding MF
GO:0032555 purine ribonucleotide binding MF
GO:0032559 adenyl ribonucleotide binding MF
GO:0033993 response to lipid BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0035639 purine ribonucleoside triphosphate binding MF
GO:0036094 small molecule binding MF
GO:0038023 signaling receptor activity MF
GO:0040008 regulation of growth BP
GO:0042221 response to chemical BP
GO:0042592 homeostatic process BP
GO:0042726 flavin-containing compound metabolic process BP
GO:0042752 regulation of circadian rhythm BP
GO:0042802 identical protein binding MF
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0048037 obsolete cofactor binding MF
GO:0048507 meristem development BP
GO:0048509 regulation of meristem development BP
GO:0048511 rhythmic process BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048571 long-day photoperiodism BP
GO:0048573 photoperiodism, flowering BP
GO:0048574 long-day photoperiodism, flowering BP
GO:0048580 regulation of post-embryonic development BP
GO:0048582 positive regulation of post-embryonic development BP
GO:0048583 regulation of response to stimulus BP
GO:0048608 reproductive structure development BP
GO:0048638 regulation of developmental growth BP
GO:0048731 system development BP
GO:0048831 regulation of shoot system development BP
GO:0048856 anatomical structure development BP
GO:0048878 chemical homeostasis BP
GO:0050660 flavin adenine dinucleotide binding MF
GO:0050662 obsolete coenzyme binding MF
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050801 monoatomic ion homeostasis BP
GO:0050896 response to stimulus BP
GO:0051094 positive regulation of developmental process BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0051276 chromosome organization BP
GO:0051480 regulation of cytosolic calcium ion concentration BP
GO:0051607 defense response to virus BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0055065 obsolete metal ion homeostasis BP
GO:0055074 calcium ion homeostasis BP
GO:0055080 monoatomic cation homeostasis BP
GO:0055082 intracellular chemical homeostasis BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0060089 molecular transducer activity MF
GO:0061458 reproductive system development BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070013 intracellular organelle lumen CC
GO:0071214 cellular response to abiotic stimulus BP
GO:0071478 cellular response to radiation BP
GO:0071482 cellular response to light stimulus BP
GO:0071483 cellular response to blue light BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071949 FAD binding MF
GO:0072387 flavin adenine dinucleotide metabolic process BP
GO:0072503 obsolete cellular divalent inorganic cation homeostasis BP
GO:0072507 obsolete divalent inorganic cation homeostasis BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:0098542 defense response to other organism BP
GO:0098771 inorganic ion homeostasis BP
GO:0104004 cellular response to environmental stimulus BP
GO:1900618 regulation of shoot system morphogenesis BP
GO:1901265 nucleoside phosphate binding MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901371 regulation of leaf morphogenesis BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901700 response to oxygen-containing compound BP
GO:1902347 response to strigolactone BP
GO:1905421 regulation of plant organ morphogenesis BP
GO:2000024 regulation of leaf development BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000028 regulation of photoperiodism, flowering BP
GO:2000241 regulation of reproductive process BP
GO:2000243 positive regulation of reproductive process BP
GO:2000377 regulation of reactive oxygen species metabolic process BP
GO:2000379 positive regulation of reactive oxygen species metabolic process BP
KEGG Term Name Description
map04712 Circadian rhythm - plant -