Basic Information
Gene ID
Potrs008892g13300
Position
Potrs008892:22929-26297 (+)
3368bp
Gene Type
gene
Gene Description (Protein Product)
Exosome complex component
Organism
Also AS Potri.013G050400AT5G38890Potri.013G050400.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs012823g17318 Exosome complex component
Potrs019739g22246 Exosome complex
Potrs019107g21349 Cop9 signalosome complex subunit
Regulatory gene
Potrs000389g00482 Dof domain, zinc finger
Potrs000591g01010 transcription factor
Potrs000883g01405 dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.